Results 101 - 118 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 123576 | 0.73 | 0.458001 |
Target: 5'- gACGAGCCC--GAGCUCC-UGGcCGCCu -3' miRNA: 3'- -UGUUCGGGgaCUUGAGGcACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 123665 | 0.67 | 0.823574 |
Target: 5'- cGCGGGCCUguaccaccuccgcaUGGugUCCacGGACGCCg -3' miRNA: 3'- -UGUUCGGGg-------------ACUugAGGcaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 123887 | 0.66 | 0.875663 |
Target: 5'- cAC-AGCCCgaGcaccAGCUgCGUGGcCGCCu -3' miRNA: 3'- -UGuUCGGGgaC----UUGAgGCACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 124915 | 0.68 | 0.769611 |
Target: 5'- aGCAugccccuGCCCCUGGACcCCGacagcagucccuccGGACGCa -3' miRNA: 3'- -UGUu------CGGGGACUUGaGGCa-------------CCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 126787 | 0.66 | 0.853059 |
Target: 5'- gGC-AGCCCCgUGGACcuggacgUCGUGcGCGCCc -3' miRNA: 3'- -UGuUCGGGG-ACUUGa------GGCACcUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 127570 | 0.66 | 0.875663 |
Target: 5'- gGCu-GCUgCUGGaggcggGCgcagCCGUGGACGUCg -3' miRNA: 3'- -UGuuCGGgGACU------UGa---GGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 128245 | 0.67 | 0.811478 |
Target: 5'- cCAcGCCCgCgacAACUCUGggcGGACGCCg -3' miRNA: 3'- uGUuCGGG-Gac-UUGAGGCa--CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 128732 | 0.68 | 0.769611 |
Target: 5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3' miRNA: 3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 129194 | 0.68 | 0.775238 |
Target: 5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3' miRNA: 3'- ugUUCGGggACuuGAGGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 129403 | 0.66 | 0.836154 |
Target: 5'- -gGAGCCgCUcaUGGACaugcucaUCCGgcUGGGCGCCa -3' miRNA: 3'- ugUUCGG-GG--ACUUG-------AGGC--ACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 129603 | 0.69 | 0.727129 |
Target: 5'- cGCGAGCgaCCgugGAGCUCguccggcggcuCGUGGcCGCCg -3' miRNA: 3'- -UGUUCGg-GGa--CUUGAG-----------GCACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130708 | 0.7 | 0.636117 |
Target: 5'- gACGGGCCC--GGACUCCGUGu-CGCUc -3' miRNA: 3'- -UGUUCGGGgaCUUGAGGCACcuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130738 | 0.72 | 0.554738 |
Target: 5'- cGCucguGGCCgCUGGguccgacguguGCaCCGUGGACGCCc -3' miRNA: 3'- -UGu---UCGGgGACU-----------UGaGGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130753 | 0.68 | 0.765836 |
Target: 5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3' miRNA: 3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130944 | 0.69 | 0.717223 |
Target: 5'- --cAGCCguuCCUGGACgccggcguggCCGUGGACGUg -3' miRNA: 3'- uguUCGG---GGACUUGa---------GGCACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 131366 | 0.69 | 0.717223 |
Target: 5'- gGCGAcgccGCUCCUGGACguggUCUGcagccGGACGCCg -3' miRNA: 3'- -UGUU----CGGGGACUUG----AGGCa----CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 131421 | 0.7 | 0.646354 |
Target: 5'- gGCGcgcGGCUCCgcGGACUCCGUcuccgcGGAgGCCg -3' miRNA: 3'- -UGU---UCGGGGa-CUUGAGGCA------CCUgCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 131534 | 0.68 | 0.756314 |
Target: 5'- gAUAGGCCCgUGcccGCUaCCGgcGGACGUCg -3' miRNA: 3'- -UGUUCGGGgACu--UGA-GGCa-CCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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