miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 119453 0.67 0.784512
Target:  5'- uCGAGCCcuaCCUGGucACcgUCCaGUGGACGCa -3'
miRNA:   3'- uGUUCGG---GGACU--UG--AGG-CACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 117215 0.66 0.868339
Target:  5'- cGCcuGUCgCUGAGCccUCCGaccGGAUGCCg -3'
miRNA:   3'- -UGuuCGGgGACUUG--AGGCa--CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 115400 0.72 0.51511
Target:  5'- gACAcGCUCC---GCUCCGaGGACGCCg -3'
miRNA:   3'- -UGUuCGGGGacuUGAGGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 115038 0.7 0.61564
Target:  5'- cCAAGCUCaucaGACUCgcggaCGUGGACGCCg -3'
miRNA:   3'- uGUUCGGGgac-UUGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 114889 0.68 0.765836
Target:  5'- --cGGCCCCau--CUUCGUGGAagcCGCCa -3'
miRNA:   3'- uguUCGGGGacuuGAGGCACCU---GCGG- -5'
25573 3' -56.8 NC_005337.1 + 114665 0.7 0.611549
Target:  5'- cGCGGGCCUCgaggccgccuCUCCGcUGGACGCa -3'
miRNA:   3'- -UGUUCGGGGacuu------GAGGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 111858 0.7 0.61564
Target:  5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 108867 0.73 0.495726
Target:  5'- uGCGAGCggaaCCC-GAACUCCGaGGcCGCCa -3'
miRNA:   3'- -UGUUCG----GGGaCUUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 107187 0.66 0.853059
Target:  5'- ---uGCCgCUGGACUUCGUGGucaccuucaACgGCCa -3'
miRNA:   3'- uguuCGGgGACUUGAGGCACC---------UG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 105214 0.7 0.636117
Target:  5'- -gGGGCCgCUGAGCUgCGcgcucgcGGGCGCCc -3'
miRNA:   3'- ugUUCGGgGACUUGAgGCa------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103987 0.67 0.784512
Target:  5'- uGCcGGCCguCCUGGcgcucaccuGCgcgCCGUGGACcGCCu -3'
miRNA:   3'- -UGuUCGG--GGACU---------UGa--GGCACCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 103482 0.7 0.625876
Target:  5'- -gAGGCCgaCCU---CUUCGUGGACGCCg -3'
miRNA:   3'- ugUUCGG--GGAcuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103185 0.7 0.625876
Target:  5'- cGCucguGGCCUcgCUGAACcccgcgaUCGUGGACGCCu -3'
miRNA:   3'- -UGu---UCGGG--GACUUGa------GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 102314 0.69 0.687108
Target:  5'- cCAuGCgCCUgGGGCUCCGcgUGGAgGCCa -3'
miRNA:   3'- uGUuCGgGGA-CUUGAGGC--ACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 101509 0.67 0.811478
Target:  5'- cGCGAGCgCUccgcgcggCUGGAggCCGUGGACGUg -3'
miRNA:   3'- -UGUUCG-GG--------GACUUgaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 101012 0.75 0.387501
Target:  5'- cGCGGGCCUCUGGauggcguggACUCgCGUGGGC-CCg -3'
miRNA:   3'- -UGUUCGGGGACU---------UGAG-GCACCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 97576 1.12 0.001378
Target:  5'- cACAAGCCCCUGAACUCCGUGGACGCCg -3'
miRNA:   3'- -UGUUCGGGGACUUGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 96556 0.68 0.746683
Target:  5'- gGCAuucuGCUCCUcgguggugaaGAGCUCgGcguccUGGACGCCg -3'
miRNA:   3'- -UGUu---CGGGGA----------CUUGAGgC-----ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 95648 0.71 0.564793
Target:  5'- cACGGGCUCCagGGGCUCCG-GGuuccccagcACGCCc -3'
miRNA:   3'- -UGUUCGGGGa-CUUGAGGCaCC---------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 95609 0.68 0.746683
Target:  5'- aGCAGcGCgCCaUGGcgGCgUCCGUGGGCGCg -3'
miRNA:   3'- -UGUU-CGgGG-ACU--UG-AGGCACCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.