miRNA display CGI


Results 41 - 60 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 94719 0.71 0.585037
Target:  5'- gACGAGUaCCC-GAGCgcccgCCG-GGGCGCCg -3'
miRNA:   3'- -UGUUCG-GGGaCUUGa----GGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 94089 0.7 0.636117
Target:  5'- cCGGGCaCCCgagGGGCg--GUGGACGCCu -3'
miRNA:   3'- uGUUCG-GGGa--CUUGaggCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 93263 0.67 0.784512
Target:  5'- gGCGGGCCUCaagcgGGACaUCC-UGGcCGCCg -3'
miRNA:   3'- -UGUUCGGGGa----CUUG-AGGcACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 93117 0.68 0.746683
Target:  5'- gACcuGCCCCUGGAgaCgGUcccGGACGCg -3'
miRNA:   3'- -UGuuCGGGGACUUgaGgCA---CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 92551 0.66 0.875663
Target:  5'- cGCGAGCUcgccuCCUGGuuCUUCGaGGACgGCCg -3'
miRNA:   3'- -UGUUCGG-----GGACUu-GAGGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 90955 0.67 0.811478
Target:  5'- gGCGAGCCCC-GAGCaguaCGUG-ACGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUUGag--GCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 89893 0.7 0.655559
Target:  5'- cACAGGCCCCaucccggUGGGCggCG-GGGCGUCg -3'
miRNA:   3'- -UGUUCGGGG-------ACUUGagGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88306 0.72 0.524918
Target:  5'- uCAAGCUCggGGACgucagCGUGGACGCCa -3'
miRNA:   3'- uGUUCGGGgaCUUGag---GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88085 0.72 0.505378
Target:  5'- uGCAGG-CCgUGGACaUgGUGGACGCCg -3'
miRNA:   3'- -UGUUCgGGgACUUGaGgCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 82239 0.69 0.687108
Target:  5'- cGCAGGUCCCgGAACUCCaUGaccGCGCg -3'
miRNA:   3'- -UGUUCGGGGaCUUGAGGcACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 81669 0.68 0.765836
Target:  5'- aGCGAGaCCCC-GAGCUCC-UGGAagUGCg -3'
miRNA:   3'- -UGUUC-GGGGaCUUGAGGcACCU--GCGg -5'
25573 3' -56.8 NC_005337.1 + 81474 0.67 0.820151
Target:  5'- aGCAGGUCCgCcguggUGGGCUCCGUGuucACGCg -3'
miRNA:   3'- -UGUUCGGG-G-----ACUUGAGGCACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 78167 0.72 0.552733
Target:  5'- cGCAGGUCCCUGAACgucacgccgaagCCGUaGAUgGCCa -3'
miRNA:   3'- -UGUUCGGGGACUUGa-----------GGCAcCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 77661 0.66 0.845115
Target:  5'- cGCgAGGUCUCgcagacGAugUCCGUGGacugcgagcGCGCCa -3'
miRNA:   3'- -UG-UUCGGGGa-----CUugAGGCACC---------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 72185 0.67 0.802641
Target:  5'- aGCAAGUaCgaGAACUCCGUGuucGugGUCg -3'
miRNA:   3'- -UGUUCGgGgaCUUGAGGCAC---CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 71160 0.66 0.868339
Target:  5'- cCGAGCCCU---GCaUCGUGGgGCGCCc -3'
miRNA:   3'- uGUUCGGGGacuUGaGGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 69752 0.72 0.544737
Target:  5'- gACGAGCUCCaGGACggCCGUGGccauguacGCGCUc -3'
miRNA:   3'- -UGUUCGGGGaCUUGa-GGCACC--------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 69237 0.67 0.820151
Target:  5'- cGCGcGCgCCUGGACgugCCG-GuGACGCUg -3'
miRNA:   3'- -UGUuCGgGGACUUGa--GGCaC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 68443 0.72 0.505378
Target:  5'- uACAGGCCCUcGAGCUCCa---GCGCCg -3'
miRNA:   3'- -UGUUCGGGGaCUUGAGGcaccUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 68179 0.74 0.439721
Target:  5'- cCGAGUacgCCCUGAGCgcggccCCGgGGGCGCCg -3'
miRNA:   3'- uGUUCG---GGGACUUGa-----GGCaCCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.