miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 66051 0.66 0.875663
Target:  5'- -gGAGCCCCagggGAGCgaCCGcaucgcGGACGCg -3'
miRNA:   3'- ugUUCGGGGa---CUUGa-GGCa-----CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 66039 0.66 0.875663
Target:  5'- cGCcGGCCgC---GCUCCGgaacccGGACGCCg -3'
miRNA:   3'- -UGuUCGGgGacuUGAGGCa-----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 64774 0.66 0.841883
Target:  5'- gGCGAggcGUUCCUGGACUUCGaguucgccgacggGGACGUCg -3'
miRNA:   3'- -UGUU---CGGGGACUUGAGGCa------------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 60389 0.67 0.802641
Target:  5'- cCAGGCagaCCUcGAugUCCGUGGccaugaGCCc -3'
miRNA:   3'- uGUUCGg--GGA-CUugAGGCACCug----CGG- -5'
25573 3' -56.8 NC_005337.1 + 59419 0.69 0.717223
Target:  5'- aGCAGGCCCUUGAcCUcgCCGUucgGGACGa- -3'
miRNA:   3'- -UGUUCGGGGACUuGA--GGCA---CCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 57136 0.68 0.736951
Target:  5'- ---cGCCagCCUGGACgCCGUGGAgCGCa -3'
miRNA:   3'- uguuCGG--GGACUUGaGGCACCU-GCGg -5'
25573 3' -56.8 NC_005337.1 + 56764 0.66 0.860802
Target:  5'- aACAAGCCCCguuAACg-CGUccGGuCGCCg -3'
miRNA:   3'- -UGUUCGGGGac-UUGagGCA--CCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 53261 0.71 0.585037
Target:  5'- --cGGCCCgUGGA---CGUGGACGCCa -3'
miRNA:   3'- uguUCGGGgACUUgagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52771 0.66 0.853059
Target:  5'- aAUggGCUCCcGcGACgcgUCGUGGuACGCCg -3'
miRNA:   3'- -UGuuCGGGGaC-UUGa--GGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52369 0.78 0.250875
Target:  5'- -gGGGCCgCUGAcggcuGCggggCCGUGGACGCCu -3'
miRNA:   3'- ugUUCGGgGACU-----UGa---GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52211 0.66 0.860802
Target:  5'- uACAucacGCCCCgGGACguggCCGcgcucGACGCCa -3'
miRNA:   3'- -UGUu---CGGGGaCUUGa---GGCac---CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 52121 0.73 0.486158
Target:  5'- gACGGGCCggCCaUGGcCUUCGUGGACGCg -3'
miRNA:   3'- -UGUUCGG--GG-ACUuGAGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 51632 0.67 0.79365
Target:  5'- gACGAGCUgCggucgGcGCUCCGcGGuCGCCa -3'
miRNA:   3'- -UGUUCGGgGa----CuUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 50852 0.66 0.868339
Target:  5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3'
miRNA:   3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 49705 0.67 0.812352
Target:  5'- cCAGcGCCCC-GGGCUCgGcgcgccgguugagcgGGACGCCg -3'
miRNA:   3'- uGUU-CGGGGaCUUGAGgCa--------------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 49319 0.72 0.554738
Target:  5'- gGCGAGCCCCUGcagaUCCG-GGAC-CUg -3'
miRNA:   3'- -UGUUCGGGGACuug-AGGCaCCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 48159 0.68 0.736951
Target:  5'- gACGAGCCCCgcgagugcugGGACccggagugcgucUCCGgGGACGUg -3'
miRNA:   3'- -UGUUCGGGGa---------CUUG------------AGGCaCCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 47241 0.7 0.61564
Target:  5'- cGCAAGCCCgUGAucguGCagUCGcUGGACGCg -3'
miRNA:   3'- -UGUUCGGGgACU----UGa-GGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 46783 0.8 0.201351
Target:  5'- gACGAGCCgCUGAAcCUCuCGgucugGGACGCCg -3'
miRNA:   3'- -UGUUCGGgGACUU-GAG-GCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 46129 0.67 0.79365
Target:  5'- aGCAGGUCCgC-GAGCUCCG---ACGCCa -3'
miRNA:   3'- -UGUUCGGG-GaCUUGAGGCaccUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.