miRNA display CGI


Results 81 - 100 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 45599 0.66 0.871294
Target:  5'- gGCGuaCCCCaUGAACUCC-UGGaugauccggaucugcGCGCCg -3'
miRNA:   3'- -UGUucGGGG-ACUUGAGGcACC---------------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 43516 0.71 0.595213
Target:  5'- gACGAGUUCCgcAGCUCCGUGGaggaGCGCa -3'
miRNA:   3'- -UGUUCGGGGacUUGAGGCACC----UGCGg -5'
25573 3' -56.8 NC_005337.1 + 43094 0.67 0.828654
Target:  5'- cGCGGcGCCCgggaUGAAgUUCGUGGAcaucucCGCCa -3'
miRNA:   3'- -UGUU-CGGGg---ACUUgAGGCACCU------GCGG- -5'
25573 3' -56.8 NC_005337.1 + 42496 0.73 0.448809
Target:  5'- cGCGAGCUCCUGAAg-CUGcGGACGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUgaGGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 41174 0.66 0.853059
Target:  5'- gGCAGGUCCUUGAug-CCGcGGAggaGCCc -3'
miRNA:   3'- -UGUUCGGGGACUugaGGCaCCUg--CGG- -5'
25573 3' -56.8 NC_005337.1 + 41168 0.66 0.842694
Target:  5'- cGCAGuccuCCCCgaucuccacgucgaUGAGCUCCGUGGagaggucgGCGCUu -3'
miRNA:   3'- -UGUUc---GGGG--------------ACUUGAGGCACC--------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 39559 0.71 0.585037
Target:  5'- gGCGGGCgCUCgGGuACUCguccuCGUGGACGCCg -3'
miRNA:   3'- -UGUUCG-GGGaCU-UGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 38550 0.69 0.672898
Target:  5'- aACGcGCUCCggaucuucucaucGGACUCCGUGcACGCCa -3'
miRNA:   3'- -UGUuCGGGGa------------CUUGAGGCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 38066 0.66 0.860802
Target:  5'- ----cUCCCacgUGAccgGgUCCGUGGGCGCCa -3'
miRNA:   3'- uguucGGGG---ACU---UgAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 37801 0.72 0.505378
Target:  5'- cCAGGCCCCgccgGAAa--CGUGG-CGCCa -3'
miRNA:   3'- uGUUCGGGGa---CUUgagGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 36459 0.67 0.828654
Target:  5'- --cAGCCCCgugcccgagaaGAACaCCGUGGACaCCa -3'
miRNA:   3'- uguUCGGGGa----------CUUGaGGCACCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 35757 0.68 0.776171
Target:  5'- gGCGGGCuCCCcccggccuugccgcgGAACUCgG-GGACGUCg -3'
miRNA:   3'- -UGUUCG-GGGa--------------CUUGAGgCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 35710 0.66 0.87494
Target:  5'- cGCGGGCUCCgucuaccggugcgUGGACggCGUGGugGUg -3'
miRNA:   3'- -UGUUCGGGG-------------ACUUGagGCACCugCGg -5'
25573 3' -56.8 NC_005337.1 + 35587 0.66 0.845115
Target:  5'- aGCGAGgcggauCCCCgccgGAGCaCCGUGGcucCGCCc -3'
miRNA:   3'- -UGUUC------GGGGa---CUUGaGGCACCu--GCGG- -5'
25573 3' -56.8 NC_005337.1 + 33600 0.71 0.595213
Target:  5'- uCGAGCCC--GAGCaCCGUcgcGGACGCCg -3'
miRNA:   3'- uGUUCGGGgaCUUGaGGCA---CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 31748 0.69 0.707245
Target:  5'- cGCAGGaagaUGGACUCCGUGG-CGUCg -3'
miRNA:   3'- -UGUUCggggACUUGAGGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 31728 0.68 0.756314
Target:  5'- uACAGGCCCUUGAGCUggUUG-GGGCuGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUGA--GGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 30535 0.66 0.836978
Target:  5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3'
miRNA:   3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 29648 0.67 0.819292
Target:  5'- cACGGGCUCCgaGAugcgcguGCUCCcgcgGUGG-CGCCg -3'
miRNA:   3'- -UGUUCGGGGa-CU-------UGAGG----CACCuGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.