miRNA display CGI


Results 101 - 118 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 46783 0.8 0.201351
Target:  5'- gACGAGCCgCUGAAcCUCuCGgucugGGACGCCg -3'
miRNA:   3'- -UGUUCGGgGACUU-GAG-GCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 39559 0.71 0.585037
Target:  5'- gGCGGGCgCUCgGGuACUCguccuCGUGGACGCCg -3'
miRNA:   3'- -UGUUCG-GGGaCU-UGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 53261 0.71 0.585037
Target:  5'- --cGGCCCgUGGA---CGUGGACGCCa -3'
miRNA:   3'- uguUCGGGgACUUgagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 57136 0.68 0.736951
Target:  5'- ---cGCCagCCUGGACgCCGUGGAgCGCa -3'
miRNA:   3'- uguuCGG--GGACUUGaGGCACCU-GCGg -5'
25573 3' -56.8 NC_005337.1 + 131366 0.69 0.717223
Target:  5'- gGCGAcgccGCUCCUGGACguggUCUGcagccGGACGCCg -3'
miRNA:   3'- -UGUU----CGGGGACUUG----AGGCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130944 0.69 0.717223
Target:  5'- --cAGCCguuCCUGGACgccggcguggCCGUGGACGUg -3'
miRNA:   3'- uguUCGG---GGACUUGa---------GGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 59419 0.69 0.717223
Target:  5'- aGCAGGCCCUUGAcCUcgCCGUucgGGACGa- -3'
miRNA:   3'- -UGUUCGGGGACUuGA--GGCA---CCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 102314 0.69 0.687108
Target:  5'- cCAuGCgCCUgGGGCUCCGcgUGGAgGCCa -3'
miRNA:   3'- uGUuCGgGGA-CUUGAGGC--ACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 82239 0.69 0.687108
Target:  5'- cGCAGGUCCCgGAACUCCaUGaccGCGCg -3'
miRNA:   3'- -UGUUCGGGGaCUUGAGGcACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 19473 0.69 0.676966
Target:  5'- -aGAGCCgCUGAuacaucauGC-CCGUGGGCGUg -3'
miRNA:   3'- ugUUCGGgGACU--------UGaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 89893 0.7 0.655559
Target:  5'- cACAGGCCCCaucccggUGGGCggCG-GGGCGUCg -3'
miRNA:   3'- -UGUUCGGGG-------ACUUGagGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 105214 0.7 0.636117
Target:  5'- -gGGGCCgCUGAGCUgCGcgcucgcGGGCGCCc -3'
miRNA:   3'- ugUUCGGgGACUUGAgGCa------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103482 0.7 0.625876
Target:  5'- -gAGGCCgaCCU---CUUCGUGGACGCCg -3'
miRNA:   3'- ugUUCGG--GGAcuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 47241 0.7 0.61564
Target:  5'- cGCAAGCCCgUGAucguGCagUCGcUGGACGCg -3'
miRNA:   3'- -UGUUCGGGgACU----UGa-GGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 115038 0.7 0.61564
Target:  5'- cCAAGCUCaucaGACUCgcggaCGUGGACGCCg -3'
miRNA:   3'- uGUUCGGGgac-UUGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 111858 0.7 0.61564
Target:  5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 114665 0.7 0.611549
Target:  5'- cGCGGGCCUCgaggccgccuCUCCGcUGGACGCa -3'
miRNA:   3'- -UGUUCGGGGacuu------GAGGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 97576 1.12 0.001378
Target:  5'- cACAAGCCCCUGAACUCCGUGGACGCCg -3'
miRNA:   3'- -UGUUCGGGGACUUGAGGCACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.