miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 19473 0.69 0.676966
Target:  5'- -aGAGCCgCUGAuacaucauGC-CCGUGGGCGUg -3'
miRNA:   3'- ugUUCGGgGACU--------UGaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 115400 0.72 0.51511
Target:  5'- gACAcGCUCC---GCUCCGaGGACGCCg -3'
miRNA:   3'- -UGUuCGGGGacuUGAGGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88085 0.72 0.505378
Target:  5'- uGCAGG-CCgUGGACaUgGUGGACGCCg -3'
miRNA:   3'- -UGUUCgGGgACUUGaGgCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 117215 0.66 0.868339
Target:  5'- cGCcuGUCgCUGAGCccUCCGaccGGAUGCCg -3'
miRNA:   3'- -UGuuCGGgGACUUG--AGGCa--CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 78167 0.72 0.552733
Target:  5'- cGCAGGUCCCUGAACgucacgccgaagCCGUaGAUgGCCa -3'
miRNA:   3'- -UGUUCGGGGACUUGa-----------GGCAcCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 3245 0.66 0.868339
Target:  5'- aGCGcGGCaCCgUGuACUCUGUGGAgGCg -3'
miRNA:   3'- -UGU-UCG-GGgACuUGAGGCACCUgCGg -5'
25573 3' -56.8 NC_005337.1 + 56764 0.66 0.860802
Target:  5'- aACAAGCCCCguuAACg-CGUccGGuCGCCg -3'
miRNA:   3'- -UGUUCGGGGac-UUGagGCA--CCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 107187 0.66 0.853059
Target:  5'- ---uGCCgCUGGACUUCGUGGucaccuucaACgGCCa -3'
miRNA:   3'- uguuCGGgGACUUGAGGCACC---------UG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 41168 0.66 0.842694
Target:  5'- cGCAGuccuCCCCgaucuccacgucgaUGAGCUCCGUGGagaggucgGCGCUu -3'
miRNA:   3'- -UGUUc---GGGG--------------ACUUGAGGCACC--------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 81474 0.67 0.820151
Target:  5'- aGCAGGUCCgCcguggUGGGCUCCGUGuucACGCg -3'
miRNA:   3'- -UGUUCGGG-G-----ACUUGAGGCACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 119453 0.67 0.784512
Target:  5'- uCGAGCCcuaCCUGGucACcgUCCaGUGGACGCa -3'
miRNA:   3'- uGUUCGG---GGACU--UG--AGG-CACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 81669 0.68 0.765836
Target:  5'- aGCGAGaCCCC-GAGCUCC-UGGAagUGCg -3'
miRNA:   3'- -UGUUC-GGGGaCUUGAGGcACCU--GCGg -5'
25573 3' -56.8 NC_005337.1 + 31728 0.68 0.756314
Target:  5'- uACAGGCCCUUGAGCUggUUG-GGGCuGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUGA--GGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 131366 0.69 0.717223
Target:  5'- gGCGAcgccGCUCCUGGACguggUCUGcagccGGACGCCg -3'
miRNA:   3'- -UGUU----CGGGGACUUG----AGGCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 102314 0.69 0.687108
Target:  5'- cCAuGCgCCUgGGGCUCCGcgUGGAgGCCa -3'
miRNA:   3'- uGUuCGgGGA-CUUGAGGC--ACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 103482 0.7 0.625876
Target:  5'- -gAGGCCgaCCU---CUUCGUGGACGCCg -3'
miRNA:   3'- ugUUCGG--GGAcuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 111858 0.7 0.61564
Target:  5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 95648 0.71 0.564793
Target:  5'- cACGGGCUCCagGGGCUCCG-GGuuccccagcACGCCc -3'
miRNA:   3'- -UGUUCGGGGa-CUUGAGGCaCC---------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.