miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 18708 0.68 0.746683
Target:  5'- uCGGGCCCCggcgagGAGCUgCGgcgcgcuGGCGCCu -3'
miRNA:   3'- uGUUCGGGGa-----CUUGAgGCac-----CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 36459 0.67 0.828654
Target:  5'- --cAGCCCCgugcccgagaaGAACaCCGUGGACaCCa -3'
miRNA:   3'- uguUCGGGGa----------CUUGaGGCACCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 129194 0.68 0.775238
Target:  5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3'
miRNA:   3'- ugUUCGGggACuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 35757 0.68 0.776171
Target:  5'- gGCGGGCuCCCcccggccuugccgcgGAACUCgG-GGACGUCg -3'
miRNA:   3'- -UGUUCG-GGGa--------------CUUGAGgCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29577 0.71 0.564793
Target:  5'- cACAgcAGCUCCUcggcGGugUCCGacgcGGACGCCa -3'
miRNA:   3'- -UGU--UCGGGGA----CUugAGGCa---CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 96556 0.68 0.746683
Target:  5'- gGCAuucuGCUCCUcgguggugaaGAGCUCgGcguccUGGACGCCg -3'
miRNA:   3'- -UGUu---CGGGGA----------CUUGAGgC-----ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 127570 0.66 0.875663
Target:  5'- gGCu-GCUgCUGGaggcggGCgcagCCGUGGACGUCg -3'
miRNA:   3'- -UGuuCGGgGACU------UGa---GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 66051 0.66 0.875663
Target:  5'- -gGAGCCCCagggGAGCgaCCGcaucgcGGACGCg -3'
miRNA:   3'- ugUUCGGGGa---CUUGa-GGCa-----CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 25010 0.66 0.875663
Target:  5'- cGCucGUacgaCUUGAugUUCGUGaGGCGCCg -3'
miRNA:   3'- -UGuuCGg---GGACUugAGGCAC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 71160 0.66 0.868339
Target:  5'- cCGAGCCCU---GCaUCGUGGgGCGCCc -3'
miRNA:   3'- uGUUCGGGGacuUGaGGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 50852 0.66 0.868339
Target:  5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3'
miRNA:   3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 13935 0.66 0.860802
Target:  5'- gGCGcAGCCCCgucguGCUCCaUGGGCGa- -3'
miRNA:   3'- -UGU-UCGGGGacu--UGAGGcACCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 13830 0.7 0.646354
Target:  5'- aGCGcGCCCCgcagGGACUCgGgGGGCGUg -3'
miRNA:   3'- -UGUuCGGGGa---CUUGAGgCaCCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 130708 0.7 0.636117
Target:  5'- gACGGGCCC--GGACUCCGUGu-CGCUc -3'
miRNA:   3'- -UGUUCGGGgaCUUGAGGCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 94089 0.7 0.636117
Target:  5'- cCGGGCaCCCgagGGGCg--GUGGACGCCu -3'
miRNA:   3'- uGUUCG-GGGa--CUUGaggCACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.