miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 1984 0.7 0.666787
Target:  5'- gACGAGCUCC--AGCUCgCGUcGGACGaCCg -3'
miRNA:   3'- -UGUUCGGGGacUUGAG-GCA-CCUGC-GG- -5'
25573 3' -56.8 NC_005337.1 + 3245 0.66 0.868339
Target:  5'- aGCGcGGCaCCgUGuACUCUGUGGAgGCg -3'
miRNA:   3'- -UGU-UCG-GGgACuUGAGGCACCUgCGg -5'
25573 3' -56.8 NC_005337.1 + 4662 0.67 0.802641
Target:  5'- cACGAGCCgCCggacGAGCUCCacGGuCGCUc -3'
miRNA:   3'- -UGUUCGG-GGa---CUUGAGGcaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6705 0.66 0.845115
Target:  5'- cCAGGCCCUUcucgagcagGAACgagaCCacgGGGCGCCg -3'
miRNA:   3'- uGUUCGGGGA---------CUUGa---GGca-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 10777 0.77 0.272051
Target:  5'- aGCAGGCggggucguCCCUGGauacgauagcgaaccGCUgCGUGGACGCCg -3'
miRNA:   3'- -UGUUCG--------GGGACU---------------UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 12528 0.69 0.697204
Target:  5'- -gAGGUUCCUgcGAGCUCCGUGaACGCg -3'
miRNA:   3'- ugUUCGGGGA--CUUGAGGCACcUGCGg -5'
25573 3' -56.8 NC_005337.1 + 13830 0.7 0.646354
Target:  5'- aGCGcGCCCCgcagGGACUCgGgGGGCGUg -3'
miRNA:   3'- -UGUuCGGGGa---CUUGAGgCaCCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 13935 0.66 0.860802
Target:  5'- gGCGcAGCCCCgucguGCUCCaUGGGCGa- -3'
miRNA:   3'- -UGU-UCGGGGacu--UGAGGcACCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 14102 0.66 0.853059
Target:  5'- uACAGGCUCUUG-ACUaugCGggcGGugGCCa -3'
miRNA:   3'- -UGUUCGGGGACuUGAg--GCa--CCugCGG- -5'
25573 3' -56.8 NC_005337.1 + 14904 0.66 0.845115
Target:  5'- gGCGcGGCgCCgauggugGAagcaGCUCuCGUGGugGCCg -3'
miRNA:   3'- -UGU-UCGgGGa------CU----UGAG-GCACCugCGG- -5'
25573 3' -56.8 NC_005337.1 + 18708 0.68 0.746683
Target:  5'- uCGGGCCCCggcgagGAGCUgCGgcgcgcuGGCGCCu -3'
miRNA:   3'- uGUUCGGGGa-----CUUGAgGCac-----CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 19473 0.69 0.676966
Target:  5'- -aGAGCCgCUGAuacaucauGC-CCGUGGGCGUg -3'
miRNA:   3'- ugUUCGGgGACU--------UGaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 22910 0.67 0.811478
Target:  5'- cGCGAGCUCUUcagcgacagcGucCUCCGcuacuuccUGGACGCCa -3'
miRNA:   3'- -UGUUCGGGGA----------CuuGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 25010 0.66 0.875663
Target:  5'- cGCucGUacgaCUUGAugUUCGUGaGGCGCCg -3'
miRNA:   3'- -UGuuCGg---GGACUugAGGCAC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29340 0.71 0.574894
Target:  5'- aGCAGGCCCa-GGAUcuggUCCGUGG-UGCCc -3'
miRNA:   3'- -UGUUCGGGgaCUUG----AGGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29577 0.71 0.564793
Target:  5'- cACAgcAGCUCCUcggcGGugUCCGacgcGGACGCCa -3'
miRNA:   3'- -UGU--UCGGGGA----CUugAGGCa---CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29648 0.67 0.819292
Target:  5'- cACGGGCUCCgaGAugcgcguGCUCCcgcgGUGG-CGCCg -3'
miRNA:   3'- -UGUUCGGGGa-CU-------UGAGG----CACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 30535 0.66 0.836978
Target:  5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3'
miRNA:   3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.