miRNA display CGI


Results 41 - 60 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 87900 0.66 0.612532
Target:  5'- cCUGGCUgacgCGCUGGCgcGCCUgcgCCGGc- -3'
miRNA:   3'- -GACCGGua--GCGGCCG--UGGAa--GGCCcu -5'
25573 5' -61.4 NC_005337.1 + 90586 0.72 0.314676
Target:  5'- -cGGuCCGUCGUCGGCGuCCgcCCGGGc -3'
miRNA:   3'- gaCC-GGUAGCGGCCGU-GGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 91883 0.74 0.233417
Target:  5'- -aGGCCGcgCGCCgcGGCGCCU-CCGGGu -3'
miRNA:   3'- gaCCGGUa-GCGG--CCGUGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 93125 0.67 0.59269
Target:  5'- aCUGcgaGCaCAUCGCCGaGCGCaucgggUUCGGGAa -3'
miRNA:   3'- -GAC---CG-GUAGCGGC-CGUGga----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 93278 0.66 0.612532
Target:  5'- -aGGCCGggggugCGUCGGCGCCUggUGGcGGu -3'
miRNA:   3'- gaCCGGUa-----GCGGCCGUGGAagGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 93606 0.66 0.662258
Target:  5'- --cGCCGUCGCCgcgccuagagGGCGCCccacugcgUCGGGAc -3'
miRNA:   3'- gacCGGUAGCGG----------CCGUGGaa------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 94618 0.67 0.582806
Target:  5'- -cGGCCAUgGCCGcacagaauaucaGCACCaacaccgCCGGGu -3'
miRNA:   3'- gaCCGGUAgCGGC------------CGUGGaa-----GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 97214 0.66 0.641388
Target:  5'- gUGGCCAUCguggucaGCCGGCACUUcgCCa--- -3'
miRNA:   3'- gACCGGUAG-------CGGCCGUGGAa-GGcccu -5'
25573 5' -61.4 NC_005337.1 + 97614 1.08 0.001009
Target:  5'- gCUGGCCAUCGCCGGCACCUUCCGGGAc -3'
miRNA:   3'- -GACCGGUAGCGGCCGUGGAAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 97725 0.76 0.179126
Target:  5'- gUGGC--UCGCCGGCGCCgcccagccgCCGGGGa -3'
miRNA:   3'- gACCGguAGCGGCCGUGGaa-------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 98016 0.69 0.477516
Target:  5'- gCUGGUCG-CGCUGGcCACCgacgggCUGGGGu -3'
miRNA:   3'- -GACCGGUaGCGGCC-GUGGaa----GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 101193 0.69 0.476599
Target:  5'- -gGGCCgcGUCGCUGGUgcgauGCCUgauggcgUCCGGGu -3'
miRNA:   3'- gaCCGG--UAGCGGCCG-----UGGA-------AGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 103228 0.68 0.504482
Target:  5'- gCUGGacaugCGUCGCCGcaaGCGCCUgggcuucUUCGGGAa -3'
miRNA:   3'- -GACCg----GUAGCGGC---CGUGGA-------AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 103990 0.66 0.662258
Target:  5'- -cGGCCGUC-CUGGCgcucACCUgcgcgCCGuGGAc -3'
miRNA:   3'- gaCCGGUAGcGGCCG----UGGAa----GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 115420 0.69 0.450392
Target:  5'- --cGCCGucUCGCCGGC-Cg-UCCGGGAg -3'
miRNA:   3'- gacCGGU--AGCGGCCGuGgaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 121571 0.69 0.445069
Target:  5'- --cGCCuUCGCCGaGCACCgcauguacgcgcgCCGGGAg -3'
miRNA:   3'- gacCGGuAGCGGC-CGUGGaa-----------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 122345 0.66 0.622478
Target:  5'- -cGGCCGggacgaCGUCGGCaACCUgCUGGGc -3'
miRNA:   3'- gaCCGGUa-----GCGGCCG-UGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 127685 0.66 0.652328
Target:  5'- gCUGaCCGUCgGCCGGCucguCCaUCCGGa- -3'
miRNA:   3'- -GACcGGUAG-CGGCCGu---GGaAGGCCcu -5'
25573 5' -61.4 NC_005337.1 + 128147 0.66 0.649346
Target:  5'- cCUGGCCgagcauGUCGCCGGgCugCUgugUCCGugcgcacugccgccGGAg -3'
miRNA:   3'- -GACCGG------UAGCGGCC-GugGA---AGGC--------------CCU- -5'
25573 5' -61.4 NC_005337.1 + 131192 0.69 0.490448
Target:  5'- gCUGGCCGUCGCCGaggugcgcggaguccGCGCUagccgCCGGu- -3'
miRNA:   3'- -GACCGGUAGCGGC---------------CGUGGaa---GGCCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.