miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 56785 0.67 0.582806
Target:  5'- -cGGUCGcCGCCauGCACCgccCCGGGAc -3'
miRNA:   3'- gaCCGGUaGCGGc-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 74703 0.68 0.514882
Target:  5'- gCUGGCCgcGUgGCUGGCGaaguaCUggcCCGGGGg -3'
miRNA:   3'- -GACCGG--UAgCGGCCGUg----GAa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 38909 0.68 0.49604
Target:  5'- -cGGCCGUCGCUGuuGCCUU-CGGcGAc -3'
miRNA:   3'- gaCCGGUAGCGGCcgUGGAAgGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 82596 0.66 0.622478
Target:  5'- aCUGGCC-UCGCCGuaGgCgUCCaGGGGc -3'
miRNA:   3'- -GACCGGuAGCGGCcgUgGaAGG-CCCU- -5'
25573 5' -61.4 NC_005337.1 + 16945 0.67 0.582806
Target:  5'- uUGGCCGUCGCC---ACCgugaCGGGAu -3'
miRNA:   3'- gACCGGUAGCGGccgUGGaag-GCCCU- -5'
25573 5' -61.4 NC_005337.1 + 131192 0.69 0.490448
Target:  5'- gCUGGCCGUCGCCGaggugcgcggaguccGCGCUagccgCCGGu- -3'
miRNA:   3'- -GACCGGUAGCGGC---------------CGUGGaa---GGCCcu -5'
25573 5' -61.4 NC_005337.1 + 87900 0.66 0.612532
Target:  5'- cCUGGCUgacgCGCUGGCgcGCCUgcgCCGGc- -3'
miRNA:   3'- -GACCGGua--GCGGCCG--UGGAa--GGCCcu -5'
25573 5' -61.4 NC_005337.1 + 101193 0.69 0.476599
Target:  5'- -gGGCCgcGUCGCUGGUgcgauGCCUgauggcgUCCGGGu -3'
miRNA:   3'- gaCCGG--UAGCGGCCG-----UGGA-------AGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 39537 0.67 0.59269
Target:  5'- -cGGUCGUggcUGCCGGCGCC--CCGGcGGg -3'
miRNA:   3'- gaCCGGUA---GCGGCCGUGGaaGGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 84969 0.69 0.467475
Target:  5'- aUGGCCuccagguAUCGCCGGU-CCgcCCGGGc -3'
miRNA:   3'- gACCGG-------UAGCGGCCGuGGaaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 1093 0.68 0.505424
Target:  5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3'
miRNA:   3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 75089 0.68 0.501661
Target:  5'- --aGCCGUCGCCGGUGCCccgacgcacggcCUGGGGg -3'
miRNA:   3'- gacCGGUAGCGGCCGUGGaa----------GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 128147 0.66 0.649346
Target:  5'- cCUGGCCgagcauGUCGCCGGgCugCUgugUCCGugcgcacugccgccGGAg -3'
miRNA:   3'- -GACCGG------UAGCGGCC-GugGA---AGGC--------------CCU- -5'
25573 5' -61.4 NC_005337.1 + 122345 0.66 0.622478
Target:  5'- -cGGCCGggacgaCGUCGGCaACCUgCUGGGc -3'
miRNA:   3'- gaCCGGUa-----GCGGCCG-UGGAaGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 1093 0.68 0.505424
Target:  5'- -gGGCUAcaGCCGGCgcagcGCCgccgCCGGGAg -3'
miRNA:   3'- gaCCGGUagCGGCCG-----UGGaa--GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 40120 0.66 0.652328
Target:  5'- -cGGuucuCCGUCGUggggaGGCGCCgccCCGGGAa -3'
miRNA:   3'- gaCC----GGUAGCGg----CCGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 3327 0.67 0.572956
Target:  5'- -cGGCCA-CGCCGGCG---UCCaGGAa -3'
miRNA:   3'- gaCCGGUaGCGGCCGUggaAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 94618 0.67 0.582806
Target:  5'- -cGGCCAUgGCCGcacagaauaucaGCACCaacaccgCCGGGu -3'
miRNA:   3'- gaCCGGUAgCGGC------------CGUGGaa-----GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 35748 0.66 0.662258
Target:  5'- -cGGCCGUCggGCgGGCuccccccgGCCUUgCCGcGGAa -3'
miRNA:   3'- gaCCGGUAG--CGgCCG--------UGGAA-GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 81237 0.66 0.662258
Target:  5'- -aGGCCGUugCGCCGGCAgCUcCCGc-- -3'
miRNA:   3'- gaCCGGUA--GCGGCCGUgGAaGGCccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.