miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 5' -61.4 NC_005337.1 + 93278 0.66 0.612532
Target:  5'- -aGGCCGggggugCGUCGGCGCCUggUGGcGGu -3'
miRNA:   3'- gaCCGGUa-----GCGGCCGUGGAagGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 23065 0.67 0.59269
Target:  5'- aUGGCgcUCGUgGGCGgCUcggggUCCGGGAa -3'
miRNA:   3'- gACCGguAGCGgCCGUgGA-----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 39537 0.67 0.59269
Target:  5'- -cGGUCGUggcUGCCGGCGCC--CCGGcGGg -3'
miRNA:   3'- gaCCGGUA---GCGGCCGUGGaaGGCC-CU- -5'
25573 5' -61.4 NC_005337.1 + 81741 0.67 0.59269
Target:  5'- uCUGGCUGUcgcCGCCGGCGCCguucUCCu--- -3'
miRNA:   3'- -GACCGGUA---GCGGCCGUGGa---AGGcccu -5'
25573 5' -61.4 NC_005337.1 + 93125 0.67 0.59269
Target:  5'- aCUGcgaGCaCAUCGCCGaGCGCaucgggUUCGGGAa -3'
miRNA:   3'- -GAC---CG-GUAGCGGC-CGUGga----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 84213 0.67 0.586756
Target:  5'- gUGGCCAucauguaccaccuguUCcaGCgCGGCAUCUUCCuGGAc -3'
miRNA:   3'- gACCGGU---------------AG--CG-GCCGUGGAAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 94618 0.67 0.582806
Target:  5'- -cGGCCAUgGCCGcacagaauaucaGCACCaacaccgCCGGGu -3'
miRNA:   3'- gaCCGGUAgCGGC------------CGUGGaa-----GGCCCu -5'
25573 5' -61.4 NC_005337.1 + 56897 0.67 0.582806
Target:  5'- -cGGCUgguGUUG-CGGCACCgcgggaUCCGGGGc -3'
miRNA:   3'- gaCCGG---UAGCgGCCGUGGa-----AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 16945 0.67 0.582806
Target:  5'- uUGGCCGUCGCC---ACCgugaCGGGAu -3'
miRNA:   3'- gACCGGUAGCGGccgUGGaag-GCCCU- -5'
25573 5' -61.4 NC_005337.1 + 56785 0.67 0.582806
Target:  5'- -cGGUCGcCGCCauGCACCgccCCGGGAc -3'
miRNA:   3'- gaCCGGUaGCGGc-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 56090 0.67 0.572956
Target:  5'- cCUGGCCAUCuaCGGCuucggcgugACgUUCaGGGAc -3'
miRNA:   3'- -GACCGGUAGcgGCCG---------UGgAAGgCCCU- -5'
25573 5' -61.4 NC_005337.1 + 3327 0.67 0.572956
Target:  5'- -cGGCCA-CGCCGGCG---UCCaGGAa -3'
miRNA:   3'- gaCCGGUaGCGGCCGUggaAGGcCCU- -5'
25573 5' -61.4 NC_005337.1 + 19691 0.67 0.57099
Target:  5'- -cGGCCGcguggcguacagCGCCGGCGCCaUCUGcGGc -3'
miRNA:   3'- gaCCGGUa-----------GCGGCCGUGGaAGGC-CCu -5'
25573 5' -61.4 NC_005337.1 + 81692 0.67 0.553379
Target:  5'- uUGGCCGccagCGCCGccGCGCCguccCCGcGGAg -3'
miRNA:   3'- gACCGGUa---GCGGC--CGUGGaa--GGC-CCU- -5'
25573 5' -61.4 NC_005337.1 + 57243 0.67 0.553379
Target:  5'- -aGGCCGUgCaCCGGCGCUggUUCGGGc -3'
miRNA:   3'- gaCCGGUA-GcGGCCGUGGa-AGGCCCu -5'
25573 5' -61.4 NC_005337.1 + 42137 0.68 0.543665
Target:  5'- gCUGGCC--CG-CGGCGCg-UCCGGGGu -3'
miRNA:   3'- -GACCGGuaGCgGCCGUGgaAGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 45656 0.68 0.524412
Target:  5'- gCUGGUC-UCG-CGGUACagcUCCGGGAa -3'
miRNA:   3'- -GACCGGuAGCgGCCGUGga-AGGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 40041 0.68 0.524412
Target:  5'- -gGGCguCGUCGCgGuGCGCCgaaCCGGGGa -3'
miRNA:   3'- gaCCG--GUAGCGgC-CGUGGaa-GGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 29377 0.68 0.524412
Target:  5'- -cGGCCGUCG-CGGCGCUgg-UGGGGu -3'
miRNA:   3'- gaCCGGUAGCgGCCGUGGaagGCCCU- -5'
25573 5' -61.4 NC_005337.1 + 74703 0.68 0.514882
Target:  5'- gCUGGCCgcGUgGCUGGCGaaguaCUggcCCGGGGg -3'
miRNA:   3'- -GACCGG--UAgCGGCCGUg----GAa--GGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.