miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25576 3' -60.5 NC_005337.1 + 99346 0.66 0.763335
Target:  5'- gCUUCAUGCGCGUgaaGGGCaucgacuugacgcccGUggaCGCGCGGc -3'
miRNA:   3'- -GGAGUGCGCGCG---CCCG---------------CAg--GUGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 28261 0.66 0.759693
Target:  5'- --cCACGCGCacguGCGuGGUGUCCGugauCACGa -3'
miRNA:   3'- ggaGUGCGCG----CGC-CCGCAGGU----GUGCc -5'
25576 3' -60.5 NC_005337.1 + 7824 0.66 0.759693
Target:  5'- uCCUcCGCGacaGCGCGcGGUGguaCACGCGc -3'
miRNA:   3'- -GGA-GUGCg--CGCGC-CCGCag-GUGUGCc -5'
25576 3' -60.5 NC_005337.1 + 53655 0.66 0.759693
Target:  5'- uCCgcCACGCGCGCuucgcGGCGUgcUCGCugGa -3'
miRNA:   3'- -GGa-GUGCGCGCGc----CCGCA--GGUGugCc -5'
25576 3' -60.5 NC_005337.1 + 28476 0.66 0.759693
Target:  5'- uCCUggagCACGgaugcggcCGCGCGGcGCGcggUCGCGCGGc -3'
miRNA:   3'- -GGA----GUGC--------GCGCGCC-CGCa--GGUGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 35099 0.66 0.759693
Target:  5'- aUCUCGa-CGCGCau-CGUCCGCGCGGc -3'
miRNA:   3'- -GGAGUgcGCGCGcccGCAGGUGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 110074 0.66 0.759693
Target:  5'- aCCUCgACGCGCGCcucgccgguaacGGcGCGaggCUGCGCGu -3'
miRNA:   3'- -GGAG-UGCGCGCG------------CC-CGCa--GGUGUGCc -5'
25576 3' -60.5 NC_005337.1 + 92735 0.66 0.759693
Target:  5'- aCCUCGuggcCGCGaccgacaucCGCGaGCGgauggCCGCGCGGa -3'
miRNA:   3'- -GGAGU----GCGC---------GCGCcCGCa----GGUGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 91519 0.66 0.759693
Target:  5'- gUCgaaGCGgGCGCGagaGGCGUCggucagcagCGCGCGGa -3'
miRNA:   3'- -GGag-UGCgCGCGC---CCGCAG---------GUGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 88945 0.66 0.759693
Target:  5'- gCUCGCGgacCGCGCGgaGGCGgaggGCGCGGu -3'
miRNA:   3'- gGAGUGC---GCGCGC--CCGCagg-UGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 121912 0.66 0.759693
Target:  5'- -aUCGCGaCGCGCcGcGaCGUCCGCggACGGa -3'
miRNA:   3'- ggAGUGC-GCGCGcC-C-GCAGGUG--UGCC- -5'
25576 3' -60.5 NC_005337.1 + 86112 0.66 0.759693
Target:  5'- gCCUC-CGCGCGCGaGGaGUCCGg---- -3'
miRNA:   3'- -GGAGuGCGCGCGC-CCgCAGGUgugcc -5'
25576 3' -60.5 NC_005337.1 + 36785 0.66 0.759693
Target:  5'- aCCUCGUGCGaccCGCuGGGCGUCagcCGCGu -3'
miRNA:   3'- -GGAGUGCGC---GCG-CCCGCAGgu-GUGCc -5'
25576 3' -60.5 NC_005337.1 + 4038 0.66 0.759693
Target:  5'- --gUACGCGUGCaGcGGCGUCUugucgaGCGGg -3'
miRNA:   3'- ggaGUGCGCGCG-C-CCGCAGGug----UGCC- -5'
25576 3' -60.5 NC_005337.1 + 15475 0.66 0.758779
Target:  5'- aCCgacgGCGCGCGCGgcacgacGGCGccgCCGC-CGGc -3'
miRNA:   3'- -GGag--UGCGCGCGC-------CCGCa--GGUGuGCC- -5'
25576 3' -60.5 NC_005337.1 + 68310 0.66 0.758779
Target:  5'- --aCGCGCGUGCccgaggaGGGCGgcaCGCGCGu -3'
miRNA:   3'- ggaGUGCGCGCG-------CCCGCag-GUGUGCc -5'
25576 3' -60.5 NC_005337.1 + 3655 0.66 0.758779
Target:  5'- gCCUCGucgucCGCGCaGuCGGGgGUCUugcgucgcgcccgACGCGGc -3'
miRNA:   3'- -GGAGU-----GCGCG-C-GCCCgCAGG-------------UGUGCC- -5'
25576 3' -60.5 NC_005337.1 + 34539 0.66 0.750515
Target:  5'- gCCUCGCGUaGCcgGCGGGagagcguccUGUCCGCgACGa -3'
miRNA:   3'- -GGAGUGCG-CG--CGCCC---------GCAGGUG-UGCc -5'
25576 3' -60.5 NC_005337.1 + 112371 0.66 0.750515
Target:  5'- aCCUCcaugaaGCGCGCGUccuggaGGaGCG-CCGCGCaGGc -3'
miRNA:   3'- -GGAG------UGCGCGCG------CC-CGCaGGUGUG-CC- -5'
25576 3' -60.5 NC_005337.1 + 30931 0.66 0.750515
Target:  5'- uUCUCGacaccagcaGCGgGCGGGUGagCCGCcCGGc -3'
miRNA:   3'- -GGAGUg--------CGCgCGCCCGCa-GGUGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.