miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25577 3' -56.2 NC_005337.1 + 66190 0.66 0.903332
Target:  5'- uCGagCGCCAUcaagacggagccgGAGGGGAUCgUGCUGu -3'
miRNA:   3'- -GCagGCGGUGa------------CUCCCCUAGaAUGGC- -5'
25577 3' -56.2 NC_005337.1 + 8420 0.66 0.892997
Target:  5'- uGUCCG-CACcGcGGGGAUCgcauCCGg -3'
miRNA:   3'- gCAGGCgGUGaCuCCCCUAGaau-GGC- -5'
25577 3' -56.2 NC_005337.1 + 42800 0.67 0.857023
Target:  5'- aGUCCGCCGCgaagcacGGGAUCgUGCUc -3'
miRNA:   3'- gCAGGCGGUGacuc---CCCUAGaAUGGc -5'
25577 3' -56.2 NC_005337.1 + 1835 0.67 0.841175
Target:  5'- aCGUUgGUgGC-GAGGGGGUCgcaGCCGc -3'
miRNA:   3'- -GCAGgCGgUGaCUCCCCUAGaa-UGGC- -5'
25577 3' -56.2 NC_005337.1 + 61877 0.67 0.832964
Target:  5'- aCGUCgCGCCACcccGGGGGcUCgcugACCGc -3'
miRNA:   3'- -GCAG-GCGGUGac-UCCCCuAGaa--UGGC- -5'
25577 3' -56.2 NC_005337.1 + 63232 0.68 0.798375
Target:  5'- uGUUCGCCACgaAGGGGuUCggGCCc -3'
miRNA:   3'- gCAGGCGGUGacUCCCCuAGaaUGGc -5'
25577 3' -56.2 NC_005337.1 + 3661 0.68 0.789332
Target:  5'- uCGUCCGCgCAgUc-GGGGGUCUUGCg- -3'
miRNA:   3'- -GCAGGCG-GUgAcuCCCCUAGAAUGgc -5'
25577 3' -56.2 NC_005337.1 + 127801 0.69 0.746056
Target:  5'- uCGUCCGCgCGCUGGucaccgccaccaacuGGGGGuucuUCUUcCCGg -3'
miRNA:   3'- -GCAGGCG-GUGACU---------------CCCCU----AGAAuGGC- -5'
25577 3' -56.2 NC_005337.1 + 111534 0.69 0.732426
Target:  5'- gCGcUCCGCCGCgugcagGucGGGGUCggcggUGCCGu -3'
miRNA:   3'- -GC-AGGCGGUGa-----CucCCCUAGa----AUGGC- -5'
25577 3' -56.2 NC_005337.1 + 13181 0.7 0.712666
Target:  5'- gCGUCCGCCucGCgGuucacGGGGAUgaUGCCGu -3'
miRNA:   3'- -GCAGGCGG--UGaCu----CCCCUAgaAUGGC- -5'
25577 3' -56.2 NC_005337.1 + 94818 1.09 0.002686
Target:  5'- aCGUCCGCCACUGAGGGGAUCUUACCGu -3'
miRNA:   3'- -GCAGGCGGUGACUCCCCUAGAAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.