miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25577 5' -58.8 NC_005337.1 + 81445 0.66 0.764748
Target:  5'- uUCAGCGaGCaCCGGGUGcaucgccggGGCGGGu -3'
miRNA:   3'- uGGUCGUcCG-GGCCCACaaa------UCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 821 0.66 0.733
Target:  5'- aGCCGuccgcgcgcGCGGGCCCGGGcucgacgaaggcGGCGGGc -3'
miRNA:   3'- -UGGU---------CGUCCGGGCCCacaaa-------UCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 821 0.66 0.733
Target:  5'- aGCCGuccgcgcgcGCGGGCCCGGGcucgacgaaggcGGCGGGc -3'
miRNA:   3'- -UGGU---------CGUCCGGGCCCacaaa-------UCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 80516 0.66 0.726133
Target:  5'- gGCgGGCacgccgAGGCCCGGGgc----GCGGAg -3'
miRNA:   3'- -UGgUCG------UCCGGGCCCacaaauCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 50367 0.66 0.726133
Target:  5'- gGCCAGCAGGCgCCGcccccGUacccGGCGGAc -3'
miRNA:   3'- -UGGUCGUCCG-GGCc----CAcaaaUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 88567 0.67 0.686229
Target:  5'- cGCUGGCGGGCCgGGG-GUUccGGCucacGGAg -3'
miRNA:   3'- -UGGUCGUCCGGgCCCaCAAa-UCG----CCU- -5'
25577 5' -58.8 NC_005337.1 + 49703 0.67 0.676119
Target:  5'- cACCAGCgccccGGGCUCGGcGcgccgGUUgAGCGGGa -3'
miRNA:   3'- -UGGUCG-----UCCGGGCC-Ca----CAAaUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 63524 0.67 0.665974
Target:  5'- gACguGCAGGCCuCGGGcGUgcGGCGc- -3'
miRNA:   3'- -UGguCGUCCGG-GCCCaCAaaUCGCcu -5'
25577 5' -58.8 NC_005337.1 + 89890 0.67 0.665974
Target:  5'- cGCCA-CAGGCCCcaucccGGUGggcGGCGGGg -3'
miRNA:   3'- -UGGUcGUCCGGGc-----CCACaaaUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 60264 0.68 0.655801
Target:  5'- aGCCggagucggGGCAGGCgCGGGgGUgggAGUGGGc -3'
miRNA:   3'- -UGG--------UCGUCCGgGCCCaCAaa-UCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 77427 0.68 0.645609
Target:  5'- cCCAGCgAGGCCCGcGUGgagggcauGUGGAg -3'
miRNA:   3'- uGGUCG-UCCGGGCcCACaaau----CGCCU- -5'
25577 5' -58.8 NC_005337.1 + 50361 0.68 0.645609
Target:  5'- cGCCGGCggagacGGGCCCGGGcacgggcgccUGgc--GCGGGg -3'
miRNA:   3'- -UGGUCG------UCCGGGCCC----------ACaaauCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 92032 0.68 0.625202
Target:  5'- uCCAGCggguggacguAGGUCCGGGUGaggucgUAGCuGGGc -3'
miRNA:   3'- uGGUCG----------UCCGGGCCCACaa----AUCG-CCU- -5'
25577 5' -58.8 NC_005337.1 + 88268 0.69 0.588563
Target:  5'- cGCCGGCGGGCgCCGcGGaggacauggccgagaUGga-GGCGGAg -3'
miRNA:   3'- -UGGUCGUCCG-GGC-CC---------------ACaaaUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 78990 0.69 0.574406
Target:  5'- gGCgCGGCuguAGGCCCcGGUGa-UGGCGGAg -3'
miRNA:   3'- -UG-GUCG---UCCGGGcCCACaaAUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 62853 0.7 0.524615
Target:  5'- cACCAGCAGGCgCaGGaacgcgAGCGGAa -3'
miRNA:   3'- -UGGUCGUCCGgGcCCacaaa-UCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 52188 0.74 0.303377
Target:  5'- cACCAaCGGGCUCGuGGUGUUccUGGUGGAg -3'
miRNA:   3'- -UGGUcGUCCGGGC-CCACAA--AUCGCCU- -5'
25577 5' -58.8 NC_005337.1 + 94856 1.08 0.001487
Target:  5'- cACCAGCAGGCCCGGGUGUUUAGCGGAu -3'
miRNA:   3'- -UGGUCGUCCGGGCCCACAAAUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.