miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 3' -58.6 NC_005337.1 + 80201 0.66 0.783744
Target:  5'- aGCUCGc--GCGUCucguugauGAGCGCgCGCacGCGg -3'
miRNA:   3'- -CGAGCuuaCGCAG--------CUCGCGgGCG--CGC- -5'
25579 3' -58.6 NC_005337.1 + 59105 0.66 0.783744
Target:  5'- uGUUCGAguuccgGUGCGuggacuUCGGGaaguucuaccUGCCCGUGCGg -3'
miRNA:   3'- -CGAGCU------UACGC------AGCUC----------GCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 122086 0.66 0.783744
Target:  5'- cGCUCGG-UGC-UCGAccagcucgucGCGCaCgGCGCGg -3'
miRNA:   3'- -CGAGCUuACGcAGCU----------CGCG-GgCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 109766 0.66 0.783744
Target:  5'- gGCUUGGGcacGgGcCGAGCGCgucgCCGCGCa -3'
miRNA:   3'- -CGAGCUUa--CgCaGCUCGCG----GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 133377 0.66 0.774639
Target:  5'- cGCUCGuc-GCGcUCGGGCuccuGCUCgGCGCGc -3'
miRNA:   3'- -CGAGCuuaCGC-AGCUCG----CGGG-CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 41395 0.66 0.774639
Target:  5'- cGCgcgCGGgcagAUGaCGUCcGGCGUCCGCGgGa -3'
miRNA:   3'- -CGa--GCU----UAC-GCAGcUCGCGGGCGCgC- -5'
25579 3' -58.6 NC_005337.1 + 133377 0.66 0.774639
Target:  5'- cGCUCGuc-GCGcUCGGGCuccuGCUCgGCGCGc -3'
miRNA:   3'- -CGAGCuuaCGC-AGCUCG----CGGG-CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 30076 0.67 0.765412
Target:  5'- --cCGAGgaugGCG-CG-GCGCUCGCGCa -3'
miRNA:   3'- cgaGCUUa---CGCaGCuCGCGGGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 68726 0.67 0.765412
Target:  5'- aCUUGAAguccGCGaucaccucuuUCGAGCGCaCGCGCa -3'
miRNA:   3'- cGAGCUUa---CGC----------AGCUCGCGgGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 130720 0.67 0.765412
Target:  5'- uGCgUGGAgcuCGUCGAGCGCUCGUGg- -3'
miRNA:   3'- -CGaGCUUac-GCAGCUCGCGGGCGCgc -5'
25579 3' -58.6 NC_005337.1 + 99580 0.67 0.756071
Target:  5'- uGCUCGugcgGCGcuUCGGGCGggaCUGCGCc -3'
miRNA:   3'- -CGAGCuua-CGC--AGCUCGCg--GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 108637 0.67 0.756071
Target:  5'- -aUCGAc-GCGgccguggCGGGCGaCCGCGCGg -3'
miRNA:   3'- cgAGCUuaCGCa------GCUCGCgGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 86508 0.67 0.746624
Target:  5'- cCUCGAAguacGCGUuggcgcggCGGGCGCCCuucucccaguaGUGCGa -3'
miRNA:   3'- cGAGCUUa---CGCA--------GCUCGCGGG-----------CGCGC- -5'
25579 3' -58.6 NC_005337.1 + 118785 0.67 0.746624
Target:  5'- cGCcggCGGcgGCGcCGucGUGCCgCGCGCGc -3'
miRNA:   3'- -CGa--GCUuaCGCaGCu-CGCGG-GCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 16050 0.67 0.737081
Target:  5'- gGCUcCGcgcacugcauGAUGaCGUCGGGCgGCuCCGCGCc -3'
miRNA:   3'- -CGA-GC----------UUAC-GCAGCUCG-CG-GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 59690 0.67 0.737081
Target:  5'- cGC-CG-AUGCG-CGAcagcGCGUCCGCGUGc -3'
miRNA:   3'- -CGaGCuUACGCaGCU----CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 23887 0.67 0.737081
Target:  5'- uGUUCGccUGCcuccuccgccuGUCGcugccgcGCGCCCGCGCGc -3'
miRNA:   3'- -CGAGCuuACG-----------CAGCu------CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 15327 0.67 0.737081
Target:  5'- -gUgGAAUaucGCG-CGAcgcacgcuGCGCCCGCGCGa -3'
miRNA:   3'- cgAgCUUA---CGCaGCU--------CGCGGGCGCGC- -5'
25579 3' -58.6 NC_005337.1 + 18175 0.67 0.735161
Target:  5'- uGCUCGAcgaacuccaccGUGUCGguguAGCGCuCCGUGCa -3'
miRNA:   3'- -CGAGCUua---------CGCAGC----UCGCG-GGCGCGc -5'
25579 3' -58.6 NC_005337.1 + 127250 0.67 0.727449
Target:  5'- uGCUCGGccugAUGCuGgaggCGGGCGCggacguCCGCGCc -3'
miRNA:   3'- -CGAGCU----UACG-Ca---GCUCGCG------GGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.