miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 12551 0.66 0.965942
Target:  5'- aGUGCACGUGCAgCg--GCGU-CUUGu -3'
miRNA:   3'- gCGCGUGCAUGUgGaagCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 73398 0.66 0.965617
Target:  5'- gGCGCGCccGCACCcgcagcUCGUggacgugGUGCUCGg -3'
miRNA:   3'- gCGCGUGcaUGUGGa-----AGCG-------CAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 86678 0.66 0.96259
Target:  5'- gCGCGCGCGgcgucgcccACGCCca-GCGgcugcgGCUCGu -3'
miRNA:   3'- -GCGCGUGCa--------UGUGGaagCGCa-----UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 73652 0.66 0.96259
Target:  5'- uCGaGCACG-ACGCgUUCGCGUGggCGa -3'
miRNA:   3'- -GCgCGUGCaUGUGgAAGCGCAUgaGC- -5'
25579 5' -53.6 NC_005337.1 + 65727 0.66 0.96259
Target:  5'- gGCGCGCccgGCGCCgucacuagCGCGgcacGCUCa -3'
miRNA:   3'- gCGCGUGca-UGUGGaa------GCGCa---UGAGc -5'
25579 5' -53.6 NC_005337.1 + 97772 0.66 0.96259
Target:  5'- aCGCGCGCGcUGCGCgagaaggaccgCUUCGUGUGgUg- -3'
miRNA:   3'- -GCGCGUGC-AUGUG-----------GAAGCGCAUgAgc -5'
25579 5' -53.6 NC_005337.1 + 65317 0.66 0.96259
Target:  5'- gCGCGCGCGcAUGCCgcuguccCGCGUcgUCGg -3'
miRNA:   3'- -GCGCGUGCaUGUGGaa-----GCGCAugAGC- -5'
25579 5' -53.6 NC_005337.1 + 72434 0.66 0.96259
Target:  5'- gGCGUgaGCGUGCuCCg-CGaCGUGCUCa -3'
miRNA:   3'- gCGCG--UGCAUGuGGaaGC-GCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 42555 0.66 0.961892
Target:  5'- gGCGCugGUGCGgCUgcggcuggaggcCGCGggGCUCu -3'
miRNA:   3'- gCGCGugCAUGUgGAa-----------GCGCa-UGAGc -5'
25579 5' -53.6 NC_005337.1 + 100428 0.66 0.96154
Target:  5'- gCGCGcCACGUggacgacuucauaaACAcggcCCUUCGCGacggACUCa -3'
miRNA:   3'- -GCGC-GUGCA--------------UGU----GGAAGCGCa---UGAGc -5'
25579 5' -53.6 NC_005337.1 + 7333 0.66 0.961186
Target:  5'- uCGCGCGCGUucacguccGCGCCcgccuccagcaGCGU-CUCGa -3'
miRNA:   3'- -GCGCGUGCA--------UGUGGaag--------CGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 25030 0.66 0.959382
Target:  5'- uGCGCGCGgcggACACCgaggagcugcugcgCGcCGUGCgggCGg -3'
miRNA:   3'- gCGCGUGCa---UGUGGaa------------GC-GCAUGa--GC- -5'
25579 5' -53.6 NC_005337.1 + 9948 0.66 0.959382
Target:  5'- uCGCGcCGCGUccaugaGCGCCUgcgccgcgacgaggcCGCGUcCUCGg -3'
miRNA:   3'- -GCGC-GUGCA------UGUGGAa--------------GCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 6344 0.66 0.959014
Target:  5'- uCGCGCAC---CGCgUcCGCGUACUUGc -3'
miRNA:   3'- -GCGCGUGcauGUGgAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 565 0.66 0.959014
Target:  5'- gGcCGCGCGUACGCCgcggccgCGCGgaaGC-CGc -3'
miRNA:   3'- gC-GCGUGCAUGUGGaa-----GCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 85865 0.66 0.959014
Target:  5'- aGCGC-CaGUACGCCga-GCGUcuccgugcgcgGCUCGa -3'
miRNA:   3'- gCGCGuG-CAUGUGGaagCGCA-----------UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 565 0.66 0.959014
Target:  5'- gGcCGCGCGUACGCCgcggccgCGCGgaaGC-CGc -3'
miRNA:   3'- gC-GCGUGCAUGUGGaa-----GCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 98980 0.66 0.959014
Target:  5'- cCGCGCGaugaaGUGCAUCgaggccguggagUUCGCGcGCUCc -3'
miRNA:   3'- -GCGCGUg----CAUGUGG------------AAGCGCaUGAGc -5'
25579 5' -53.6 NC_005337.1 + 132835 0.66 0.959014
Target:  5'- uCGCGCACcucgGCGCCgcCGC--GCUCGc -3'
miRNA:   3'- -GCGCGUGca--UGUGGaaGCGcaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 129509 0.66 0.959014
Target:  5'- -cCGCGCGU-CAUCgaCGCGcUGCUCGc -3'
miRNA:   3'- gcGCGUGCAuGUGGaaGCGC-AUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.