miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25580 3' -54.9 NC_005337.1 + 108999 0.66 0.937457
Target:  5'- aCGCUgGCCGA-GGAGGGcucgCgGAACGu -3'
miRNA:   3'- -GCGAaCGGCUgCUUCCCa---GgCUUGUc -5'
25580 3' -54.9 NC_005337.1 + 80590 0.66 0.937457
Target:  5'- aCGCgc-CCGGCGcuucAAGGGUCCagcGAGCAc -3'
miRNA:   3'- -GCGaacGGCUGC----UUCCCAGG---CUUGUc -5'
25580 3' -54.9 NC_005337.1 + 108127 0.66 0.93697
Target:  5'- aCGCUgGUCGGCGugguGGuGUCCGAcaaccgucuggagGCGGa -3'
miRNA:   3'- -GCGAaCGGCUGCuu--CC-CAGGCU-------------UGUC- -5'
25580 3' -54.9 NC_005337.1 + 95610 0.66 0.932472
Target:  5'- aGCgucUGCUGcACGucGGGUuuGAGCGa -3'
miRNA:   3'- gCGa--ACGGC-UGCuuCCCAggCUUGUc -5'
25580 3' -54.9 NC_005337.1 + 1752 0.66 0.932472
Target:  5'- gGCccGCCcgGACGAAGGG-CUGcAGCAGc -3'
miRNA:   3'- gCGaaCGG--CUGCUUCCCaGGC-UUGUC- -5'
25580 3' -54.9 NC_005337.1 + 2982 0.66 0.931446
Target:  5'- uGCUcUGCaCGGCGAGGGGUagaaguacgagaCGAGCc- -3'
miRNA:   3'- gCGA-ACG-GCUGCUUCCCAg-----------GCUUGuc -5'
25580 3' -54.9 NC_005337.1 + 95546 0.66 0.927245
Target:  5'- gGuCUUGCCGACGccGGuGUCCcccguCAGg -3'
miRNA:   3'- gC-GAACGGCUGCuuCC-CAGGcuu--GUC- -5'
25580 3' -54.9 NC_005337.1 + 9111 0.66 0.921774
Target:  5'- gGCUUGUCGGCGGucuccaGGUaCCGGuACAGc -3'
miRNA:   3'- gCGAACGGCUGCUuc----CCA-GGCU-UGUC- -5'
25580 3' -54.9 NC_005337.1 + 106245 0.66 0.91606
Target:  5'- uCGCgUGCCGGCGGcaggcgaugcAGGGcagcgUgGAGCAGa -3'
miRNA:   3'- -GCGaACGGCUGCU----------UCCCa----GgCUUGUC- -5'
25580 3' -54.9 NC_005337.1 + 98023 0.67 0.903909
Target:  5'- gCGCUggccaCCGACGGgcuGGGGUUCGucCGGg -3'
miRNA:   3'- -GCGAac---GGCUGCU---UCCCAGGCuuGUC- -5'
25580 3' -54.9 NC_005337.1 + 40586 0.67 0.903909
Target:  5'- cCGCUcGCUGGCGAAGaaGUCCagGAACAu -3'
miRNA:   3'- -GCGAaCGGCUGCUUCc-CAGG--CUUGUc -5'
25580 3' -54.9 NC_005337.1 + 99249 0.67 0.897476
Target:  5'- gCGCUcGCCGcggacgGCGAcgcGGGGUUCGGcACGGc -3'
miRNA:   3'- -GCGAaCGGC------UGCU---UCCCAGGCU-UGUC- -5'
25580 3' -54.9 NC_005337.1 + 125215 0.67 0.890808
Target:  5'- cCGCgacggUGCgGACGugaacuucacGGGUCCGuACGGg -3'
miRNA:   3'- -GCGa----ACGgCUGCuu--------CCCAGGCuUGUC- -5'
25580 3' -54.9 NC_005337.1 + 127889 0.67 0.890128
Target:  5'- gCGCggcGCCGGCGAGcgcgugcGGG-CCGAGCc- -3'
miRNA:   3'- -GCGaa-CGGCUGCUU-------CCCaGGCUUGuc -5'
25580 3' -54.9 NC_005337.1 + 66549 0.67 0.883909
Target:  5'- cCGCgccGCCggucccggagGACGAcGGGUCCGAgAUAGa -3'
miRNA:   3'- -GCGaa-CGG----------CUGCUuCCCAGGCU-UGUC- -5'
25580 3' -54.9 NC_005337.1 + 107278 0.67 0.883909
Target:  5'- cCGCUuccgGCUGcCGGAcGGGUCCGAGa-- -3'
miRNA:   3'- -GCGAa---CGGCuGCUU-CCCAGGCUUguc -5'
25580 3' -54.9 NC_005337.1 + 1056 0.67 0.876782
Target:  5'- gGCgggagGCCGGCGggGGcGgacugCgGGACGGa -3'
miRNA:   3'- gCGaa---CGGCUGCuuCC-Ca----GgCUUGUC- -5'
25580 3' -54.9 NC_005337.1 + 1056 0.67 0.876782
Target:  5'- gGCgggagGCCGGCGggGGcGgacugCgGGACGGa -3'
miRNA:   3'- gCGaa---CGGCUGCuuCC-Ca----GgCUUGUC- -5'
25580 3' -54.9 NC_005337.1 + 35157 0.67 0.876782
Target:  5'- uCGCgucGCUGGCGGAGuGGUCgGcGACGGc -3'
miRNA:   3'- -GCGaa-CGGCUGCUUC-CCAGgC-UUGUC- -5'
25580 3' -54.9 NC_005337.1 + 10669 0.67 0.876782
Target:  5'- gCGCgccgGCCGGCGgcGGGUucuccUCGAagGCGGc -3'
miRNA:   3'- -GCGaa--CGGCUGCuuCCCA-----GGCU--UGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.