miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25580 5' -61.5 NC_005337.1 + 125151 0.66 0.689288
Target:  5'- --gCGCGCuGUACCGGUaCCUGGa-- -3'
miRNA:   3'- gagGCGCGcCAUGGCCAgGGGCCaag -5'
25580 5' -61.5 NC_005337.1 + 28494 0.66 0.689288
Target:  5'- -gCCGCGCGGcGCgCGGUCgCgCGGc-- -3'
miRNA:   3'- gaGGCGCGCCaUG-GCCAG-GgGCCaag -5'
25580 5' -61.5 NC_005337.1 + 39660 0.66 0.689288
Target:  5'- -gCCGCGUGGggcGCgUGG-CCCCGGg-- -3'
miRNA:   3'- gaGGCGCGCCa--UG-GCCaGGGGCCaag -5'
25580 5' -61.5 NC_005337.1 + 128317 0.66 0.689288
Target:  5'- gCUCgCGCGCGGcgcgagcgcgacUGCuCGGUCCaacgCCGGcgUCu -3'
miRNA:   3'- -GAG-GCGCGCC------------AUG-GCCAGG----GGCCa-AG- -5'
25580 5' -61.5 NC_005337.1 + 7722 0.66 0.689288
Target:  5'- uCUCCGCuacCGGUgaGCCGGUagCCGGaUCc -3'
miRNA:   3'- -GAGGCGc--GCCA--UGGCCAggGGCCaAG- -5'
25580 5' -61.5 NC_005337.1 + 63430 0.66 0.67954
Target:  5'- --gCGCGCGGUucuCCGcGUUCUCGGg-- -3'
miRNA:   3'- gagGCGCGCCAu--GGC-CAGGGGCCaag -5'
25580 5' -61.5 NC_005337.1 + 124791 0.66 0.67954
Target:  5'- gCUCUGCGCGcagauggGCCGGcgguggacgCgCCGGUUCc -3'
miRNA:   3'- -GAGGCGCGCca-----UGGCCa--------GgGGCCAAG- -5'
25580 5' -61.5 NC_005337.1 + 6656 0.66 0.669756
Target:  5'- -gCCGCGCGGUACaacgccGUCUguCCGGcgUCg -3'
miRNA:   3'- gaGGCGCGCCAUGgc----CAGG--GGCCa-AG- -5'
25580 5' -61.5 NC_005337.1 + 122763 0.66 0.669756
Target:  5'- -aCCGCGUGGagUACUGG-CCgCGGaUCa -3'
miRNA:   3'- gaGGCGCGCC--AUGGCCaGGgGCCaAG- -5'
25580 5' -61.5 NC_005337.1 + 6790 0.66 0.669756
Target:  5'- aCUCCcCGCGGUGguguaCGGaggCCCCGGc-- -3'
miRNA:   3'- -GAGGcGCGCCAUg----GCCa--GGGGCCaag -5'
25580 5' -61.5 NC_005337.1 + 83354 0.66 0.669756
Target:  5'- -gUCGCGCauGGUcACCGGUuccucucccagCCCCaGGUUCc -3'
miRNA:   3'- gaGGCGCG--CCA-UGGCCA-----------GGGG-CCAAG- -5'
25580 5' -61.5 NC_005337.1 + 45334 0.66 0.666815
Target:  5'- cCUCCGCGCGGUccGCgagcucgcagacgaCGGUCagcaCGGUg- -3'
miRNA:   3'- -GAGGCGCGCCA--UG--------------GCCAGgg--GCCAag -5'
25580 5' -61.5 NC_005337.1 + 46457 0.66 0.650111
Target:  5'- uCUgCGCGCGGcgcGCCGGcgagCuCCCGGg-- -3'
miRNA:   3'- -GAgGCGCGCCa--UGGCCa---G-GGGCCaag -5'
25580 5' -61.5 NC_005337.1 + 59845 0.66 0.640265
Target:  5'- aUCCG-GCGGUAgCGGUCgaugcgCCGGUa- -3'
miRNA:   3'- gAGGCgCGCCAUgGCCAGg-----GGCCAag -5'
25580 5' -61.5 NC_005337.1 + 55541 0.67 0.620562
Target:  5'- aCUCCGagaGCaGU-CCGGUCuCCCGcguGUUCa -3'
miRNA:   3'- -GAGGCg--CGcCAuGGCCAG-GGGC---CAAG- -5'
25580 5' -61.5 NC_005337.1 + 45504 0.67 0.600892
Target:  5'- --aCGCGCGG-ACCugcgccuccgGGUCCUCGGcgUCg -3'
miRNA:   3'- gagGCGCGCCaUGG----------CCAGGGGCCa-AG- -5'
25580 5' -61.5 NC_005337.1 + 7497 0.67 0.591085
Target:  5'- gUCCaCGgGGcUGCCGGUCUCCaGGUa- -3'
miRNA:   3'- gAGGcGCgCC-AUGGCCAGGGG-CCAag -5'
25580 5' -61.5 NC_005337.1 + 88953 0.67 0.581306
Target:  5'- -aCCGCGCGGaggcggaggGCgCGGUC-CCGGUg- -3'
miRNA:   3'- gaGGCGCGCCa--------UG-GCCAGgGGCCAag -5'
25580 5' -61.5 NC_005337.1 + 35490 0.67 0.581306
Target:  5'- aCUCgacgaGCGCGuuGUACCGGUCCacggcgcugCCGGUg- -3'
miRNA:   3'- -GAGg----CGCGC--CAUGGCCAGG---------GGCCAag -5'
25580 5' -61.5 NC_005337.1 + 44018 0.67 0.571561
Target:  5'- gUCCGCGUGcUACCGGUaccugCCCaCGGa-- -3'
miRNA:   3'- gAGGCGCGCcAUGGCCA-----GGG-GCCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.