miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25581 3' -49.8 NC_005337.1 + 23989 0.66 0.993036
Target:  5'- cGUGCucAUGUUCCUcGugUUCUacgUGCCGg -3'
miRNA:   3'- -CAUG--UACAAGGAcCugAAGAa--GCGGU- -5'
25581 3' -49.8 NC_005337.1 + 48560 0.66 0.991954
Target:  5'- cGUAgcCGUGUUCCgGGAgCUUCUgcUgGCCGu -3'
miRNA:   3'- -CAU--GUACAAGGaCCU-GAAGA--AgCGGU- -5'
25581 3' -49.8 NC_005337.1 + 102868 0.67 0.987891
Target:  5'- aGUGCAUGUUCgucaUGGACaugaugCGCCGc -3'
miRNA:   3'- -CAUGUACAAGg---ACCUGaagaa-GCGGU- -5'
25581 3' -49.8 NC_005337.1 + 128003 0.67 0.987891
Target:  5'- cUGCGgcUGcUCCUGGACgcCggCGCCAg -3'
miRNA:   3'- cAUGU--ACaAGGACCUGaaGaaGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 52383 0.67 0.984405
Target:  5'- cUGCG-GggCCgUGGACgcCUUCGCCAa -3'
miRNA:   3'- cAUGUaCaaGG-ACCUGaaGAAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 22608 0.68 0.982398
Target:  5'- --cCGUGgaCCcGGACUUCUUCgaGCCGg -3'
miRNA:   3'- cauGUACaaGGaCCUGAAGAAG--CGGU- -5'
25581 3' -49.8 NC_005337.1 + 86295 0.68 0.982398
Target:  5'- aGUGCGg---CCUGGACgcgUCcgCGCCGc -3'
miRNA:   3'- -CAUGUacaaGGACCUGa--AGaaGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 125582 0.68 0.975211
Target:  5'- cUGCAUGUguaCCUgucGGGgUUCUUCGUCGu -3'
miRNA:   3'- cAUGUACAa--GGA---CCUgAAGAAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 48721 0.68 0.972396
Target:  5'- cGUACGUG--CCgGGGCUUCUcacCGCCGc -3'
miRNA:   3'- -CAUGUACaaGGaCCUGAAGAa--GCGGU- -5'
25581 3' -49.8 NC_005337.1 + 122647 0.68 0.972396
Target:  5'- -----aGUUCCUGGGCUUCUacCGCa- -3'
miRNA:   3'- cauguaCAAGGACCUGAAGAa-GCGgu -5'
25581 3' -49.8 NC_005337.1 + 103244 0.69 0.958827
Target:  5'- -cGCAaGcgCCUGGGCUUCUUCGg-- -3'
miRNA:   3'- caUGUaCaaGGACCUGAAGAAGCggu -5'
25581 3' -49.8 NC_005337.1 + 125826 0.7 0.941263
Target:  5'- cUGCGUGUUCCgGGAgCUga-UCGCCGc -3'
miRNA:   3'- cAUGUACAAGGaCCU-GAagaAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 38104 0.71 0.919457
Target:  5'- uGUACAUcGUgCUcGGGCUccUCUUCGCCAu -3'
miRNA:   3'- -CAUGUA-CAaGGaCCUGA--AGAAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 123821 0.74 0.772506
Target:  5'- -cACGUGUUCCUGGGCggCUcCGUCc -3'
miRNA:   3'- caUGUACAAGGACCUGaaGAaGCGGu -5'
25581 3' -49.8 NC_005337.1 + 102315 0.75 0.721253
Target:  5'- -gACGUGagCCUGGACUUCgUCGuCCGg -3'
miRNA:   3'- caUGUACaaGGACCUGAAGaAGC-GGU- -5'
25581 3' -49.8 NC_005337.1 + 72477 0.76 0.689379
Target:  5'- -cGCGUGgaCgUGGACUaCUUCGCCAa -3'
miRNA:   3'- caUGUACaaGgACCUGAaGAAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 42679 0.78 0.591958
Target:  5'- -gACGcGcUCCUGGACUUCcUCGCCAa -3'
miRNA:   3'- caUGUaCaAGGACCUGAAGaAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 64781 0.79 0.517626
Target:  5'- -----cGUUCCUGGACUUCgagUUCGCCGa -3'
miRNA:   3'- cauguaCAAGGACCUGAAG---AAGCGGU- -5'
25581 3' -49.8 NC_005337.1 + 93679 1.1 0.00817
Target:  5'- aGUACAUGUUCCUGGACUUCUUCGCCAg -3'
miRNA:   3'- -CAUGUACAAGGACCUGAAGAAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.