miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25582 5' -59.9 NC_005337.1 + 118398 0.66 0.738795
Target:  5'- -aGCggaACCCGGucauGA-GCGAGgCCGGCGa -3'
miRNA:   3'- caCG---UGGGUCu---CUgCGCUCaGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 38222 0.66 0.738795
Target:  5'- -cGCACUCGaGGACGUGc-UCCGGCu -3'
miRNA:   3'- caCGUGGGUcUCUGCGCucAGGCCGc -5'
25582 5' -59.9 NC_005337.1 + 27022 0.66 0.738795
Target:  5'- uGUGCucCCCGGccagcagcgacAGcCGCGAGUCCaGGUa -3'
miRNA:   3'- -CACGu-GGGUC-----------UCuGCGCUCAGG-CCGc -5'
25582 5' -59.9 NC_005337.1 + 101079 0.66 0.738795
Target:  5'- -cGCGCCCcgccgucgGGAGG-GCccGUCCGGCGc -3'
miRNA:   3'- caCGUGGG--------UCUCUgCGcuCAGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 13832 0.66 0.737838
Target:  5'- -cGCGCCCcgcagggacucgGGGGGCGUGAGcuccgccUCCGGg- -3'
miRNA:   3'- caCGUGGG------------UCUCUGCGCUC-------AGGCCgc -5'
25582 5' -59.9 NC_005337.1 + 72025 0.66 0.729185
Target:  5'- -aGUACCUGGAGuuCGCGuaccuGUgCCGGCa -3'
miRNA:   3'- caCGUGGGUCUCu-GCGCu----CA-GGCCGc -5'
25582 5' -59.9 NC_005337.1 + 33268 0.66 0.729185
Target:  5'- -cGcCAUCCAGAGGCccGCGAGcgUGGCGa -3'
miRNA:   3'- caC-GUGGGUCUCUG--CGCUCagGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 95789 0.66 0.729185
Target:  5'- -gGCcaGCUCGGcGACGCGcGGcCCGGCGc -3'
miRNA:   3'- caCG--UGGGUCuCUGCGC-UCaGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 81697 0.66 0.729185
Target:  5'- aGUGCAggCAGcAGAUGUGGGUcCCGGgGg -3'
miRNA:   3'- -CACGUggGUC-UCUGCGCUCA-GGCCgC- -5'
25582 5' -59.9 NC_005337.1 + 66317 0.66 0.729185
Target:  5'- -aGCGCCgCGGu--CGCGGG-CUGGCGa -3'
miRNA:   3'- caCGUGG-GUCucuGCGCUCaGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 119002 0.66 0.719495
Target:  5'- aUGCuCgCGGAGGCGCGucgccacaacGUUCGGCGc -3'
miRNA:   3'- cACGuGgGUCUCUGCGCu---------CAGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 19884 0.66 0.719495
Target:  5'- aUGCACCggcaCAGGaGCGCGuAGUCCGcGUGc -3'
miRNA:   3'- cACGUGG----GUCUcUGCGC-UCAGGC-CGC- -5'
25582 5' -59.9 NC_005337.1 + 95413 0.66 0.710712
Target:  5'- uGUGCGCCCGcacGAGcgucACGCGGGgcagcgauagcacuaCCGGCc -3'
miRNA:   3'- -CACGUGGGU---CUC----UGCGCUCa--------------GGCCGc -5'
25582 5' -59.9 NC_005337.1 + 45194 0.66 0.709733
Target:  5'- -cGUGCCCGG-GGCGCugucgcucauGAGUCucgCGGCGg -3'
miRNA:   3'- caCGUGGGUCuCUGCG----------CUCAG---GCCGC- -5'
25582 5' -59.9 NC_005337.1 + 131616 0.66 0.709733
Target:  5'- -cGCACUCAGcguGGAgGCG-G-CCGGCGc -3'
miRNA:   3'- caCGUGGGUC---UCUgCGCuCaGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 82499 0.66 0.709733
Target:  5'- -cGCACCCGGGGAacgccacgggGCGGccGUCCaGCGc -3'
miRNA:   3'- caCGUGGGUCUCUg---------CGCU--CAGGcCGC- -5'
25582 5' -59.9 NC_005337.1 + 19327 0.66 0.709733
Target:  5'- cGUGCACaCgAG-GAUaCGGGUCUGGCa -3'
miRNA:   3'- -CACGUG-GgUCuCUGcGCUCAGGCCGc -5'
25582 5' -59.9 NC_005337.1 + 10668 0.66 0.709733
Target:  5'- -aGCACCCGcGAG-CGCGGcacGUgCGGCc -3'
miRNA:   3'- caCGUGGGU-CUCuGCGCU---CAgGCCGc -5'
25582 5' -59.9 NC_005337.1 + 129586 0.66 0.703845
Target:  5'- cGUGCugCUcaAGuccGCGCGAgcgaccguggagcucGUCCGGCGg -3'
miRNA:   3'- -CACGugGG--UCuc-UGCGCU---------------CAGGCCGC- -5'
25582 5' -59.9 NC_005337.1 + 68587 0.66 0.702861
Target:  5'- uGUGCACCaaCAGGGAcaaacucCGCGccuucgcggugggguGGUUCGGCGc -3'
miRNA:   3'- -CACGUGG--GUCUCU-------GCGC---------------UCAGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.