miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25585 5' -59.5 NC_005337.1 + 77889 0.66 0.718854
Target:  5'- -cGGUGGGGuucaccuUGUaCCCCGCGcGcgCCAu -3'
miRNA:   3'- aaCUACCCCu------ACA-GGGGCGC-Ca-GGUc -5'
25585 5' -59.5 NC_005337.1 + 26093 0.66 0.718854
Target:  5'- ----cGGGGAagcgccgccggaUGUCCaCCGCGGcgaucuccgccUCCAGa -3'
miRNA:   3'- aacuaCCCCU------------ACAGG-GGCGCC-----------AGGUC- -5'
25585 5' -59.5 NC_005337.1 + 94068 0.66 0.718854
Target:  5'- -gGAacGGGcugGUCCCUGCGG-CCGGg -3'
miRNA:   3'- aaCUacCCCua-CAGGGGCGCCaGGUC- -5'
25585 5' -59.5 NC_005337.1 + 25993 0.67 0.678973
Target:  5'- -aGcAUGGGGAUGaugcccuucgCCUCGCGGUCgAa -3'
miRNA:   3'- aaC-UACCCCUACa---------GGGGCGCCAGgUc -5'
25585 5' -59.5 NC_005337.1 + 125805 0.68 0.608035
Target:  5'- gUGcgGGGGAUGUUCCUGCuG-CCGc -3'
miRNA:   3'- aACuaCCCCUACAGGGGCGcCaGGUc -5'
25585 5' -59.5 NC_005337.1 + 82004 0.68 0.587812
Target:  5'- -cGAUGGGGAUGUCgCUGaucauGGgCCGGu -3'
miRNA:   3'- aaCUACCCCUACAGgGGCg----CCaGGUC- -5'
25585 5' -59.5 NC_005337.1 + 18463 0.68 0.587812
Target:  5'- cUGgcGGGGA-GUCCgCGCGccauGUCCAGc -3'
miRNA:   3'- aACuaCCCCUaCAGGgGCGC----CAGGUC- -5'
25585 5' -59.5 NC_005337.1 + 83209 0.69 0.547796
Target:  5'- -gGAUGGGGAUGgagCCgCUGCGGaagaUCaCGGg -3'
miRNA:   3'- aaCUACCCCUACa--GG-GGCGCC----AG-GUC- -5'
25585 5' -59.5 NC_005337.1 + 15182 0.7 0.480129
Target:  5'- gUGGUGGGGAagUGUUCCagcauaGC-GUCCAGg -3'
miRNA:   3'- aACUACCCCU--ACAGGGg-----CGcCAGGUC- -5'
25585 5' -59.5 NC_005337.1 + 128433 0.71 0.416802
Target:  5'- ----aGGGG--GUCCCCGCGGgcggCCGGg -3'
miRNA:   3'- aacuaCCCCuaCAGGGGCGCCa---GGUC- -5'
25585 5' -59.5 NC_005337.1 + 31864 0.72 0.366769
Target:  5'- ----cGGGGAUGUCCCCGCccgugggcacGGUCUu- -3'
miRNA:   3'- aacuaCCCCUACAGGGGCG----------CCAGGuc -5'
25585 5' -59.5 NC_005337.1 + 90679 1.06 0.001636
Target:  5'- cUUGAUGGGGAUGUCCCCGCGGUCCAGg -3'
miRNA:   3'- -AACUACCCCUACAGGGGCGCCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.