miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25588 3' -54.9 NC_005337.1 + 133139 0.66 0.919258
Target:  5'- cCCCGCGgAGcUGGUcgcgCGCGUGCUg--- -3'
miRNA:   3'- -GGGUGCaUCuACCG----GCGCACGAacau -5'
25588 3' -54.9 NC_005337.1 + 133139 0.66 0.919258
Target:  5'- cCCCGCGgAGcUGGUcgcgCGCGUGCUg--- -3'
miRNA:   3'- -GGGUGCaUCuACCG----GCGCACGAacau -5'
25588 3' -54.9 NC_005337.1 + 128732 0.66 0.919258
Target:  5'- cCCCgAUGUGGAgaGGUgGCGUGCcUGg- -3'
miRNA:   3'- -GGG-UGCAUCUa-CCGgCGCACGaACau -5'
25588 3' -54.9 NC_005337.1 + 39263 0.66 0.919258
Target:  5'- uCCCGCcGUucgcGGUGGCCGCGcugGCggcggcgGUGa -3'
miRNA:   3'- -GGGUG-CAu---CUACCGGCGCa--CGaa-----CAU- -5'
25588 3' -54.9 NC_005337.1 + 106231 0.66 0.919258
Target:  5'- cUCCAUGgcGgcGGUCGCGUGCc---- -3'
miRNA:   3'- -GGGUGCauCuaCCGGCGCACGaacau -5'
25588 3' -54.9 NC_005337.1 + 86634 0.66 0.913373
Target:  5'- aCCACGUAGuacccggcgGUGGCgCGCagacGCUUGUu -3'
miRNA:   3'- gGGUGCAUC---------UACCG-GCGca--CGAACAu -5'
25588 3' -54.9 NC_005337.1 + 17551 0.66 0.900865
Target:  5'- aCCACGUccacGA-GGUCGgaGUGCUUGUGc -3'
miRNA:   3'- gGGUGCAu---CUaCCGGCg-CACGAACAU- -5'
25588 3' -54.9 NC_005337.1 + 4253 0.67 0.894247
Target:  5'- -gCGCGgcGAccgcGGCCGCGUGaUUGUGg -3'
miRNA:   3'- ggGUGCauCUa---CCGGCGCACgAACAU- -5'
25588 3' -54.9 NC_005337.1 + 46587 0.67 0.894247
Target:  5'- cCCCGCGcgGGA-GGCCGCGU--UUGa- -3'
miRNA:   3'- -GGGUGCa-UCUaCCGGCGCAcgAACau -5'
25588 3' -54.9 NC_005337.1 + 31513 0.67 0.892215
Target:  5'- -gCACGUGGAUGcucacggugcagguGCCGCGguuCUUGUGg -3'
miRNA:   3'- ggGUGCAUCUAC--------------CGGCGCac-GAACAU- -5'
25588 3' -54.9 NC_005337.1 + 113505 0.67 0.880302
Target:  5'- cCCCGCGaAGcgcGUGGCCGCG-GCccUGg- -3'
miRNA:   3'- -GGGUGCaUC---UACCGGCGCaCGa-ACau -5'
25588 3' -54.9 NC_005337.1 + 21918 0.67 0.872983
Target:  5'- uUCAUGgAGGUGGCCGCGcGCUc--- -3'
miRNA:   3'- gGGUGCaUCUACCGGCGCaCGAacau -5'
25588 3' -54.9 NC_005337.1 + 52985 0.67 0.857678
Target:  5'- aCCGCG-AGAUcaGG-CGCGUGCUccUGUAg -3'
miRNA:   3'- gGGUGCaUCUA--CCgGCGCACGA--ACAU- -5'
25588 3' -54.9 NC_005337.1 + 65510 0.68 0.841526
Target:  5'- aUCCGCGUGGAgcuggugaaccUGGUgCGCGUGCg---- -3'
miRNA:   3'- -GGGUGCAUCU-----------ACCG-GCGCACGaacau -5'
25588 3' -54.9 NC_005337.1 + 132536 0.68 0.83315
Target:  5'- uCCUGCuGUcGGUGGCCGCgGUGgUUGUc -3'
miRNA:   3'- -GGGUG-CAuCUACCGGCG-CACgAACAu -5'
25588 3' -54.9 NC_005337.1 + 122706 0.68 0.83315
Target:  5'- gCCCGagGUGG-UGGuCCGCGUGCUg--- -3'
miRNA:   3'- -GGGUg-CAUCuACC-GGCGCACGAacau -5'
25588 3' -54.9 NC_005337.1 + 34568 0.69 0.79783
Target:  5'- gUCCGCGacGAUGGCCGCGcGCa---- -3'
miRNA:   3'- -GGGUGCauCUACCGGCGCaCGaacau -5'
25588 3' -54.9 NC_005337.1 + 75984 0.69 0.788589
Target:  5'- -gCACGUccucgaaggcgaAGGUGGCCGCcGUGCgccgGUAc -3'
miRNA:   3'- ggGUGCA------------UCUACCGGCG-CACGaa--CAU- -5'
25588 3' -54.9 NC_005337.1 + 77547 0.69 0.788589
Target:  5'- uUCGCGUAGuUGGCCGCGUaCUUc-- -3'
miRNA:   3'- gGGUGCAUCuACCGGCGCAcGAAcau -5'
25588 3' -54.9 NC_005337.1 + 123933 0.69 0.788589
Target:  5'- gCgGCGgcGAcGGCCGCGUGCa---- -3'
miRNA:   3'- gGgUGCauCUaCCGGCGCACGaacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.