miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25588 5' -51.8 NC_005337.1 + 79294 0.66 0.989539
Target:  5'- gGGUacgagaUGAAGCGGUUGuucgCGUCGGCGa- -3'
miRNA:   3'- -CCA------ACUUCGUCAGCca--GUAGCUGCgc -5'
25588 5' -51.8 NC_005337.1 + 47325 0.66 0.989539
Target:  5'- uGUUcGAGGCGcgcgUGGUCAUgGACGCc -3'
miRNA:   3'- cCAA-CUUCGUca--GCCAGUAgCUGCGc -5'
25588 5' -51.8 NC_005337.1 + 9745 0.66 0.989539
Target:  5'- --cUGAAGCAGcgCGcGUCGgcCGGCGCc -3'
miRNA:   3'- ccaACUUCGUCa-GC-CAGUa-GCUGCGc -5'
25588 5' -51.8 NC_005337.1 + 2295 0.66 0.989539
Target:  5'- aGGcUGcGGCggGGUCGGgagCGUCgGugGCGg -3'
miRNA:   3'- -CCaACuUCG--UCAGCCa--GUAG-CugCGC- -5'
25588 5' -51.8 NC_005337.1 + 7066 0.66 0.988698
Target:  5'- gGGUUGcgcgcguagacguGCAGcgCGGUCAugUCGuACGCGu -3'
miRNA:   3'- -CCAACuu-----------CGUCa-GCCAGU--AGC-UGCGC- -5'
25588 5' -51.8 NC_005337.1 + 93270 0.66 0.986532
Target:  5'- uGGUggcGAGGCcGggGGUgCGUCGGCGCc -3'
miRNA:   3'- -CCAa--CUUCGuCagCCA-GUAGCUGCGc -5'
25588 5' -51.8 NC_005337.1 + 132272 0.66 0.984799
Target:  5'- uGGccgUGcuGCuG-CGGUCGUCcGACGCGa -3'
miRNA:   3'- -CCa--ACuuCGuCaGCCAGUAG-CUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 1929 0.66 0.984799
Target:  5'- uGUUGcAGCggaAGUCGGUCGU--GCGCa -3'
miRNA:   3'- cCAACuUCG---UCAGCCAGUAgcUGCGc -5'
25588 5' -51.8 NC_005337.1 + 80214 0.66 0.98406
Target:  5'- cGUUGAugagcgcgcgcacGCGGUCGGg-GUCGGCGUa -3'
miRNA:   3'- cCAACUu------------CGUCAGCCagUAGCUGCGc -5'
25588 5' -51.8 NC_005337.1 + 106569 0.66 0.982902
Target:  5'- cGGgaGAucguGCAGcCGGUggCGUgGACGCGc -3'
miRNA:   3'- -CCaaCUu---CGUCaGCCA--GUAgCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 9529 0.66 0.982299
Target:  5'- cGGUU--GGCGGUCucgauguccaccgaGGUCAgcaCGACGCu -3'
miRNA:   3'- -CCAAcuUCGUCAG--------------CCAGUa--GCUGCGc -5'
25588 5' -51.8 NC_005337.1 + 118643 0.66 0.980831
Target:  5'- ---aGAGGCGGggCGGggcgCGACGCGc -3'
miRNA:   3'- ccaaCUUCGUCa-GCCaguaGCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 84113 0.67 0.976135
Target:  5'- cGGgcGAAGCAGUCGGagGagGACuuGa -3'
miRNA:   3'- -CCaaCUUCGUCAGCCagUagCUGcgC- -5'
25588 5' -51.8 NC_005337.1 + 970 0.67 0.973494
Target:  5'- gGGcUGGAGCGG-CGGggcuggCG-CGGCGCGc -3'
miRNA:   3'- -CCaACUUCGUCaGCCa-----GUaGCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 83141 0.67 0.973494
Target:  5'- -cUUGAGGUAGUCGGcgaUCAUCu-CGCc -3'
miRNA:   3'- ccAACUUCGUCAGCC---AGUAGcuGCGc -5'
25588 5' -51.8 NC_005337.1 + 970 0.67 0.973494
Target:  5'- gGGcUGGAGCGG-CGGggcuggCG-CGGCGCGc -3'
miRNA:   3'- -CCaACUUCGUCaGCCa-----GUaGCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 68365 0.67 0.973494
Target:  5'- aGGUgcccgaaGGAGCAGcgcacgccguccUCGGUCAcggCGACcGCGg -3'
miRNA:   3'- -CCAa------CUUCGUC------------AGCCAGUa--GCUG-CGC- -5'
25588 5' -51.8 NC_005337.1 + 95955 0.67 0.970648
Target:  5'- ---aGAcGC-GUCGGUCGuugcgcUCGACGCGc -3'
miRNA:   3'- ccaaCUuCGuCAGCCAGU------AGCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 78970 0.68 0.964311
Target:  5'- --gUGAAGCGGaugCGGUgCGU-GGCGCGg -3'
miRNA:   3'- ccaACUUCGUCa--GCCA-GUAgCUGCGC- -5'
25588 5' -51.8 NC_005337.1 + 78002 0.68 0.960444
Target:  5'- aGGUUGGacAGCAgcgacuccaccgcGUCGGccUCGUCGGCcgGCGa -3'
miRNA:   3'- -CCAACU--UCGU-------------CAGCC--AGUAGCUG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.