miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25590 5' -58.7 NC_005337.1 + 78686 0.66 0.819538
Target:  5'- uGCAGCGuCCGCacgccgGCGGUcuugccuaagaucucGCuGAacACGCGGg -3'
miRNA:   3'- cUGUCGC-GGCG------CGCCA---------------UG-CU--UGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 108833 0.66 0.81616
Target:  5'- cACGGUGCCgaagcGCGCGG-GCGAcACGCc- -3'
miRNA:   3'- cUGUCGCGG-----CGCGCCaUGCU-UGCGcc -5'
25590 5' -58.7 NC_005337.1 + 77424 0.66 0.81616
Target:  5'- uGGCGGUGCaUGCGCacgaagccGUGcCGGAUGCGGu -3'
miRNA:   3'- -CUGUCGCG-GCGCGc-------CAU-GCUUGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 13390 0.66 0.81616
Target:  5'- gGugGGCaCCGUGCGGgcgGAGCGaUGGa -3'
miRNA:   3'- -CugUCGcGGCGCGCCaugCUUGC-GCC- -5'
25590 5' -58.7 NC_005337.1 + 52098 0.66 0.81616
Target:  5'- -cCGGCgGCCGCGUgcaGGUGCGcGACG-GGc -3'
miRNA:   3'- cuGUCG-CGGCGCG---CCAUGC-UUGCgCC- -5'
25590 5' -58.7 NC_005337.1 + 36269 0.66 0.81616
Target:  5'- -cCAGCGCgaccaGcCGCuGcGCGAACGCGGc -3'
miRNA:   3'- cuGUCGCGg----C-GCGcCaUGCUUGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 92043 0.66 0.81616
Target:  5'- uGCAGCugGCCGUGC---GCGAAcuCGCGGa -3'
miRNA:   3'- cUGUCG--CGGCGCGccaUGCUU--GCGCC- -5'
25590 5' -58.7 NC_005337.1 + 19100 0.66 0.81616
Target:  5'- aGGCGGaCGCCG-GCGuccGCGGGCGcCGGc -3'
miRNA:   3'- -CUGUC-GCGGCgCGCca-UGCUUGC-GCC- -5'
25590 5' -58.7 NC_005337.1 + 46484 0.66 0.81616
Target:  5'- uGugGGUGgcCCGCGCGGc-CGAcacCGCGGc -3'
miRNA:   3'- -CugUCGC--GGCGCGCCauGCUu--GCGCC- -5'
25590 5' -58.7 NC_005337.1 + 65996 0.66 0.81616
Target:  5'- aGGCcguGCGUCcCGUGG-GCGAGCGCGu -3'
miRNA:   3'- -CUGu--CGCGGcGCGCCaUGCUUGCGCc -5'
25590 5' -58.7 NC_005337.1 + 70261 0.66 0.81616
Target:  5'- ---cGCGCUGCGCGcuGUGCcGGAagcCGCGGc -3'
miRNA:   3'- cuguCGCGGCGCGC--CAUG-CUU---GCGCC- -5'
25590 5' -58.7 NC_005337.1 + 87824 0.66 0.81616
Target:  5'- cGGC-GCGCCGCGCGca--GAuCGCGa -3'
miRNA:   3'- -CUGuCGCGGCGCGCcaugCUuGCGCc -5'
25590 5' -58.7 NC_005337.1 + 64924 0.66 0.81616
Target:  5'- -cCGGC-CCGCGCGGgaaaGCGcGCGCc- -3'
miRNA:   3'- cuGUCGcGGCGCGCCa---UGCuUGCGcc -5'
25590 5' -58.7 NC_005337.1 + 67860 0.66 0.81616
Target:  5'- cACGGCuGCaGCGCGGUgagguugucgagGCGcAGCGCGu -3'
miRNA:   3'- cUGUCG-CGgCGCGCCA------------UGC-UUGCGCc -5'
25590 5' -58.7 NC_005337.1 + 116927 0.66 0.81616
Target:  5'- aGACGGUGCUGCuGCGcGUGCcguaccucaaGAgcuACGUGGu -3'
miRNA:   3'- -CUGUCGCGGCG-CGC-CAUG----------CU---UGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 10348 0.66 0.815312
Target:  5'- cGCGGCcgucgccGCCGCaGCGGUAgcaGAACcagGCGGc -3'
miRNA:   3'- cUGUCG-------CGGCG-CGCCAUg--CUUG---CGCC- -5'
25590 5' -58.7 NC_005337.1 + 2096 0.66 0.815312
Target:  5'- cGGCGcGCGCCGCGagccCGGUcaggcacGCGuGCaGCGGc -3'
miRNA:   3'- -CUGU-CGCGGCGC----GCCA-------UGCuUG-CGCC- -5'
25590 5' -58.7 NC_005337.1 + 130973 0.66 0.81361
Target:  5'- gGACGuGCGCaaCGCGCGcUACGAcacgacgccgcugcACGUGGc -3'
miRNA:   3'- -CUGU-CGCG--GCGCGCcAUGCU--------------UGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 131144 0.66 0.81361
Target:  5'- cGACcgcGCGCUGgacgcgaggccggcCGCGGUcGCGGuCGCGGa -3'
miRNA:   3'- -CUGu--CGCGGC--------------GCGCCA-UGCUuGCGCC- -5'
25590 5' -58.7 NC_005337.1 + 32801 0.66 0.807604
Target:  5'- aGCAGCGCCuGCGCcuGGUccACGcacuCGCGc -3'
miRNA:   3'- cUGUCGCGG-CGCG--CCA--UGCuu--GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.