miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25591 3' -59.9 NC_005337.1 + 127800 0.66 0.724352
Target:  5'- uGC-UGGUGGACGCCGgcgcugacgucaacgUgcGGAGCGucGUCg -3'
miRNA:   3'- -UGuACCACCUGCGGC---------------A--CCUCGCc-CAG- -5'
25591 3' -59.9 NC_005337.1 + 69628 0.66 0.720457
Target:  5'- gACGUGGacaUGGACGCCGcgaUGGAGgaGGa-- -3'
miRNA:   3'- -UGUACC---ACCUGCGGC---ACCUCg-CCcag -5'
25591 3' -59.9 NC_005337.1 + 35955 0.66 0.710667
Target:  5'- cACcgGGUagGGACGCCGccgcGGcAGgGGGUa -3'
miRNA:   3'- -UGuaCCA--CCUGCGGCa---CC-UCgCCCAg -5'
25591 3' -59.9 NC_005337.1 + 93480 0.66 0.710667
Target:  5'- aACGUGGUGGuGCGCCucGGAGaCGcGGa- -3'
miRNA:   3'- -UGUACCACC-UGCGGcaCCUC-GC-CCag -5'
25591 3' -59.9 NC_005337.1 + 69051 0.66 0.710667
Target:  5'- cGCAgGGcGGugGCCagcGUGGccagcGGCGGGUg -3'
miRNA:   3'- -UGUaCCaCCugCGG---CACC-----UCGCCCAg -5'
25591 3' -59.9 NC_005337.1 + 13386 0.66 0.710667
Target:  5'- uCAgGGUGGGCaCCGUGcGGGCGGa-- -3'
miRNA:   3'- uGUaCCACCUGcGGCAC-CUCGCCcag -5'
25591 3' -59.9 NC_005337.1 + 42730 0.66 0.680946
Target:  5'- uACGUGGccacGGccGCGCCGagcgugcGGuGCGGGUCc -3'
miRNA:   3'- -UGUACCa---CC--UGCGGCa------CCuCGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 14815 0.67 0.67095
Target:  5'- uGCGUGaGcgaGGACGCCGUGGuG-GGcGUCc -3'
miRNA:   3'- -UGUAC-Ca--CCUGCGGCACCuCgCC-CAG- -5'
25591 3' -59.9 NC_005337.1 + 93279 0.67 0.650874
Target:  5'- gACAUccUGGcCGCCGUGGcagAGCGGGa- -3'
miRNA:   3'- -UGUAccACCuGCGGCACC---UCGCCCag -5'
25591 3' -59.9 NC_005337.1 + 44231 0.67 0.640811
Target:  5'- ---cGGcUGGuCuCCGUGG-GCGGGUCg -3'
miRNA:   3'- uguaCC-ACCuGcGGCACCuCGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 84587 0.67 0.634769
Target:  5'- gGCGcUGGUGugggugaccacgagcGACGCCGUGGuGCuGGG-Cg -3'
miRNA:   3'- -UGU-ACCAC---------------CUGCGGCACCuCG-CCCaG- -5'
25591 3' -59.9 NC_005337.1 + 98358 0.67 0.624699
Target:  5'- cACGUGGacgggcggaagcUGGACGCCGUgcuggucaucgucaaGGA-CGGGUUc -3'
miRNA:   3'- -UGUACC------------ACCUGCGGCA---------------CCUcGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 95618 0.67 0.620672
Target:  5'- cCAUGGcGG-CGuCCGUGGGcGCGGGcCc -3'
miRNA:   3'- uGUACCaCCuGC-GGCACCU-CGCCCaG- -5'
25591 3' -59.9 NC_005337.1 + 12336 0.68 0.610611
Target:  5'- cGCGUGGUGGugcaGCGCCGUccguccgcGGAcgucGCGGcgcGUCg -3'
miRNA:   3'- -UGUACCACC----UGCGGCA--------CCU----CGCC---CAG- -5'
25591 3' -59.9 NC_005337.1 + 40517 0.68 0.600566
Target:  5'- uGCGUGGUGG-CGCuacCGgcgaGGAggcuugcgccgGCGGGUCg -3'
miRNA:   3'- -UGUACCACCuGCG---GCa---CCU-----------CGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 38418 0.68 0.600566
Target:  5'- gACAggcUGGUGGACGaCCa-GGGGCGcGUCa -3'
miRNA:   3'- -UGU---ACCACCUGC-GGcaCCUCGCcCAG- -5'
25591 3' -59.9 NC_005337.1 + 35341 0.69 0.55081
Target:  5'- gGCGUGcGUGG-CGCCGaagUGGAGCcGGcUCa -3'
miRNA:   3'- -UGUAC-CACCuGCGGC---ACCUCGcCC-AG- -5'
25591 3' -59.9 NC_005337.1 + 33714 0.69 0.55081
Target:  5'- -gGUGGUGG-CGCCGaGGAuGC-GGUCg -3'
miRNA:   3'- ugUACCACCuGCGGCaCCU-CGcCCAG- -5'
25591 3' -59.9 NC_005337.1 + 100252 0.69 0.540997
Target:  5'- uCGUGGaGGGCGCC---GAGCGGGUg -3'
miRNA:   3'- uGUACCaCCUGCGGcacCUCGCCCAg -5'
25591 3' -59.9 NC_005337.1 + 39092 0.69 0.511932
Target:  5'- gACAUcGUGGuCGCCGUGGcGCGGa-- -3'
miRNA:   3'- -UGUAcCACCuGCGGCACCuCGCCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.