miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25591 3' -59.9 NC_005337.1 + 88096 1.09 0.001033
Target:  5'- gACAUGGUGGACGCCGUGGAGCGGGUCg -3'
miRNA:   3'- -UGUACCACCUGCGGCACCUCGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 10812 0.78 0.158669
Target:  5'- cGC-UGcGUGGACGCCGcGG-GCGGGUCu -3'
miRNA:   3'- -UGuAC-CACCUGCGGCaCCuCGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 97693 0.76 0.223892
Target:  5'- cACGUGGUGGACGUCuucuucucgccgGUGGGGUGGcUCg -3'
miRNA:   3'- -UGUACCACCUGCGG------------CACCUCGCCcAG- -5'
25591 3' -59.9 NC_005337.1 + 57126 0.73 0.303582
Target:  5'- cCGUGGUcgccgccagccuGGACGCCGUGGAGCGcagCa -3'
miRNA:   3'- uGUACCA------------CCUGCGGCACCUCGCccaG- -5'
25591 3' -59.9 NC_005337.1 + 123684 0.72 0.347139
Target:  5'- cGCAUGGUguccacGGACGCCGUGcGGCGGc-- -3'
miRNA:   3'- -UGUACCA------CCUGCGGCACcUCGCCcag -5'
25591 3' -59.9 NC_005337.1 + 23751 0.72 0.378572
Target:  5'- aGCcUGGUGGGCGCCGUGuucaccacgcgcGAGCGccacGUCg -3'
miRNA:   3'- -UGuACCACCUGCGGCAC------------CUCGCc---CAG- -5'
25591 3' -59.9 NC_005337.1 + 22478 0.72 0.378572
Target:  5'- gGCGUGGUGGAcucCGCCGacgaGGAGUGGcGcCa -3'
miRNA:   3'- -UGUACCACCU---GCGGCa---CCUCGCC-CaG- -5'
25591 3' -59.9 NC_005337.1 + 42847 0.72 0.384266
Target:  5'- cGCGUGGUggugacGGACGCCuGcgugacgaaggugcUGGAGCGGGg- -3'
miRNA:   3'- -UGUACCA------CCUGCGG-C--------------ACCUCGCCCag -5'
25591 3' -59.9 NC_005337.1 + 126356 0.71 0.419595
Target:  5'- cGCA-GGUGG-CGCuugugcagauccuCGUGGAGCGGGa- -3'
miRNA:   3'- -UGUaCCACCuGCG-------------GCACCUCGCCCag -5'
25591 3' -59.9 NC_005337.1 + 81454 0.71 0.437982
Target:  5'- cACcgGGUGcauCGCCG-GG-GCGGGUCu -3'
miRNA:   3'- -UGuaCCACcu-GCGGCaCCuCGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 41627 0.7 0.483534
Target:  5'- cCGUGGUGcGACGCCcggcgucuccGUGGAuCGGGaUCg -3'
miRNA:   3'- uGUACCAC-CUGCGG----------CACCUcGCCC-AG- -5'
25591 3' -59.9 NC_005337.1 + 15708 0.7 0.492919
Target:  5'- gACGUGccGGACGUCGUGcGAGCGcgcgaGGUCc -3'
miRNA:   3'- -UGUACcaCCUGCGGCAC-CUCGC-----CCAG- -5'
25591 3' -59.9 NC_005337.1 + 39092 0.69 0.511932
Target:  5'- gACAUcGUGGuCGCCGUGGcGCGGa-- -3'
miRNA:   3'- -UGUAcCACCuGCGGCACCuCGCCcag -5'
25591 3' -59.9 NC_005337.1 + 100252 0.69 0.540997
Target:  5'- uCGUGGaGGGCGCC---GAGCGGGUg -3'
miRNA:   3'- uGUACCaCCUGCGGcacCUCGCCCAg -5'
25591 3' -59.9 NC_005337.1 + 35341 0.69 0.55081
Target:  5'- gGCGUGcGUGG-CGCCGaagUGGAGCcGGcUCa -3'
miRNA:   3'- -UGUAC-CACCuGCGGC---ACCUCGcCC-AG- -5'
25591 3' -59.9 NC_005337.1 + 33714 0.69 0.55081
Target:  5'- -gGUGGUGG-CGCCGaGGAuGC-GGUCg -3'
miRNA:   3'- ugUACCACCuGCGGCaCCU-CGcCCAG- -5'
25591 3' -59.9 NC_005337.1 + 40517 0.68 0.600566
Target:  5'- uGCGUGGUGG-CGCuacCGgcgaGGAggcuugcgccgGCGGGUCg -3'
miRNA:   3'- -UGUACCACCuGCG---GCa---CCU-----------CGCCCAG- -5'
25591 3' -59.9 NC_005337.1 + 38418 0.68 0.600566
Target:  5'- gACAggcUGGUGGACGaCCa-GGGGCGcGUCa -3'
miRNA:   3'- -UGU---ACCACCUGC-GGcaCCUCGCcCAG- -5'
25591 3' -59.9 NC_005337.1 + 12336 0.68 0.610611
Target:  5'- cGCGUGGUGGugcaGCGCCGUccguccgcGGAcgucGCGGcgcGUCg -3'
miRNA:   3'- -UGUACCACC----UGCGGCA--------CCU----CGCC---CAG- -5'
25591 3' -59.9 NC_005337.1 + 95618 0.67 0.620672
Target:  5'- cCAUGGcGG-CGuCCGUGGGcGCGGGcCc -3'
miRNA:   3'- uGUACCaCCuGC-GGCACCU-CGCCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.