miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25591 5' -59.7 NC_005337.1 + 132093 0.66 0.709915
Target:  5'- ---cGCCGCCugcgCCGUGcGCGUCGGcGCc -3'
miRNA:   3'- uucuUGGCGG----GGUAC-CGCAGCCuCGa -5'
25591 5' -59.7 NC_005337.1 + 80496 0.66 0.679826
Target:  5'- -cGAugCGCCCCGcGGCcg-GGGGCg -3'
miRNA:   3'- uuCUugGCGGGGUaCCGcagCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 26277 0.67 0.66362
Target:  5'- ----cCCGCCCUcguagaaguacuuggAcuUGGUGUCGGAGCg -3'
miRNA:   3'- uucuuGGCGGGG---------------U--ACCGCAGCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 13862 0.67 0.659557
Target:  5'- ---uGCCGgCUCAggacGGUGUCGGAGCc -3'
miRNA:   3'- uucuUGGCgGGGUa---CCGCAGCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 14044 0.67 0.659557
Target:  5'- cGGGuACCGCUCCAUGGCGaUCuugagggacaGGuGCUu -3'
miRNA:   3'- -UUCuUGGCGGGGUACCGC-AG----------CCuCGA- -5'
25591 5' -59.7 NC_005337.1 + 8051 0.67 0.653456
Target:  5'- gGAGGGCCaGCUCCAucacgcacucgcgcgUGGCGUcCGuGGGCa -3'
miRNA:   3'- -UUCUUGG-CGGGGU---------------ACCGCA-GC-CUCGa -5'
25591 5' -59.7 NC_005337.1 + 112588 0.67 0.639201
Target:  5'- -cGAGgUGCCCgCGUGcGUGUCGGAcuGCUa -3'
miRNA:   3'- uuCUUgGCGGG-GUAC-CGCAGCCU--CGA- -5'
25591 5' -59.7 NC_005337.1 + 66593 0.67 0.618822
Target:  5'- cAGGAgACgGCCUgGUGGCuGaCGGAGCUa -3'
miRNA:   3'- -UUCU-UGgCGGGgUACCG-CaGCCUCGA- -5'
25591 5' -59.7 NC_005337.1 + 5855 0.67 0.618822
Target:  5'- cGGGGACC-CCCUgguggggagcGUGGCGUUGGGGg- -3'
miRNA:   3'- -UUCUUGGcGGGG----------UACCGCAGCCUCga -5'
25591 5' -59.7 NC_005337.1 + 86027 0.67 0.618822
Target:  5'- cGGAGgCGgUCCAUGGCGgCGGuGCa -3'
miRNA:   3'- uUCUUgGCgGGGUACCGCaGCCuCGa -5'
25591 5' -59.7 NC_005337.1 + 90591 0.67 0.618822
Target:  5'- -uGGACCcggaaCCCCAUGGCGcCGaaGAGCa -3'
miRNA:   3'- uuCUUGGc----GGGGUACCGCaGC--CUCGa -5'
25591 5' -59.7 NC_005337.1 + 71783 0.67 0.608644
Target:  5'- uAGGcGGCCGCCCCGcccGagGUCGGAGCg -3'
miRNA:   3'- -UUC-UUGGCGGGGUac-Cg-CAGCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 104715 0.68 0.598484
Target:  5'- cGAGGGCCGCCgCCGcGGCGgCGGcaucaagaucGGCg -3'
miRNA:   3'- -UUCUUGGCGG-GGUaCCGCaGCC----------UCGa -5'
25591 5' -59.7 NC_005337.1 + 10807 0.68 0.598484
Target:  5'- -cGAACCGCUgCGUGGaCGcCGcGGGCg -3'
miRNA:   3'- uuCUUGGCGGgGUACC-GCaGC-CUCGa -5'
25591 5' -59.7 NC_005337.1 + 33739 0.68 0.598484
Target:  5'- -uGAACCGCCggcgCAUGGCG-CaGAGCa -3'
miRNA:   3'- uuCUUGGCGGg---GUACCGCaGcCUCGa -5'
25591 5' -59.7 NC_005337.1 + 99001 0.68 0.588347
Target:  5'- uGGAGCCGCCCCccgagGUGcGCG-CGGccuGCg -3'
miRNA:   3'- uUCUUGGCGGGG-----UAC-CGCaGCCu--CGa -5'
25591 5' -59.7 NC_005337.1 + 77342 0.68 0.588347
Target:  5'- cGAGAugGCCGCCUCc--GCGcUCGGAGCc -3'
miRNA:   3'- -UUCU--UGGCGGGGuacCGC-AGCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 18939 0.68 0.578243
Target:  5'- cAGAuCCGCCCgccgCcgGGCGUCcGAGCa -3'
miRNA:   3'- uUCUuGGCGGG----GuaCCGCAGcCUCGa -5'
25591 5' -59.7 NC_005337.1 + 118192 0.68 0.568177
Target:  5'- -cGAGCuCGCgCCGgugGGCG-CGGAGCc -3'
miRNA:   3'- uuCUUG-GCGgGGUa--CCGCaGCCUCGa -5'
25591 5' -59.7 NC_005337.1 + 44436 0.68 0.568177
Target:  5'- cGGGAGCCGCCgCCGgaGGaCGUC-GAGCg -3'
miRNA:   3'- -UUCUUGGCGG-GGUa-CC-GCAGcCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.