miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25593 3' -52.8 NC_005337.1 + 90753 0.66 0.973539
Target:  5'- -aGCAGCugGAAGAacugcaugaaggccuUGUGCGacAGCCCGa -3'
miRNA:   3'- cgCGUCG--CUUCU---------------ACAUGUacUCGGGC- -5'
25593 3' -52.8 NC_005337.1 + 59477 0.66 0.972419
Target:  5'- gGCGCagguccccGGUGAAGAUGaugGCGUcGAagucgcGCCCGg -3'
miRNA:   3'- -CGCG--------UCGCUUCUACa--UGUA-CU------CGGGC- -5'
25593 3' -52.8 NC_005337.1 + 91085 0.66 0.972419
Target:  5'- gGCGCGGUGAccgugcucgGGAUGgGCGUGua-CCGg -3'
miRNA:   3'- -CGCGUCGCU---------UCUACaUGUACucgGGC- -5'
25593 3' -52.8 NC_005337.1 + 101007 0.66 0.972419
Target:  5'- aCGCucGCGGgccucuGGAUGgcguggacucGCGUGGGCCCGu -3'
miRNA:   3'- cGCGu-CGCU------UCUACa---------UGUACUCGGGC- -5'
25593 3' -52.8 NC_005337.1 + 46281 0.66 0.972419
Target:  5'- cGUGCAGCagcucAAGggGUACcUGGGCCa- -3'
miRNA:   3'- -CGCGUCGc----UUCuaCAUGuACUCGGgc -5'
25593 3' -52.8 NC_005337.1 + 58171 0.66 0.972419
Target:  5'- aGCGCGuGCGcauGAUGUACGUGGacaugaccGCCa- -3'
miRNA:   3'- -CGCGU-CGCuu-CUACAUGUACU--------CGGgc -5'
25593 3' -52.8 NC_005337.1 + 73002 0.66 0.972419
Target:  5'- cGCGCGgcGCGAAGAaGaaggACA--GGCCCGu -3'
miRNA:   3'- -CGCGU--CGCUUCUaCa---UGUacUCGGGC- -5'
25593 3' -52.8 NC_005337.1 + 123046 0.66 0.972419
Target:  5'- uGCGCAcCGAGGugcaccugcgGUacgGCAUGAGCCgCGu -3'
miRNA:   3'- -CGCGUcGCUUCua--------CA---UGUACUCGG-GC- -5'
25593 3' -52.8 NC_005337.1 + 32087 0.66 0.972419
Target:  5'- uGCGCAGCGucuccAGcacguUGUACAUGgcGGCgCGc -3'
miRNA:   3'- -CGCGUCGCu----UCu----ACAUGUAC--UCGgGC- -5'
25593 3' -52.8 NC_005337.1 + 99418 0.66 0.972419
Target:  5'- cGgGCGGCGGGugcGUGC-UGAGCCgCGg -3'
miRNA:   3'- -CgCGUCGCUUcuaCAUGuACUCGG-GC- -5'
25593 3' -52.8 NC_005337.1 + 97808 0.66 0.972134
Target:  5'- cGUGCGGCaggugguGAAGAccGUGCGUccGCCCGc -3'
miRNA:   3'- -CGCGUCG-------CUUCUa-CAUGUAcuCGGGC- -5'
25593 3' -52.8 NC_005337.1 + 27988 0.66 0.972134
Target:  5'- uGUGCaAGCGGcAGcUGUACGUGAucugcuccacgcuGCCCu -3'
miRNA:   3'- -CGCG-UCGCU-UCuACAUGUACU-------------CGGGc -5'
25593 3' -52.8 NC_005337.1 + 1040 0.66 0.969472
Target:  5'- uGCGCGG-GAGGcgGgcgGCggGAGgCCGg -3'
miRNA:   3'- -CGCGUCgCUUCuaCa--UGuaCUCgGGC- -5'
25593 3' -52.8 NC_005337.1 + 76841 0.66 0.969472
Target:  5'- uGCGCAGCGcacgcgguAGAUGgACggGcGUCCGg -3'
miRNA:   3'- -CGCGUCGCu-------UCUACaUGuaCuCGGGC- -5'
25593 3' -52.8 NC_005337.1 + 90949 0.66 0.969472
Target:  5'- cGCGuCGGCGAGccccGAgcaGUACGUGAcGUCCu -3'
miRNA:   3'- -CGC-GUCGCUU----CUa--CAUGUACU-CGGGc -5'
25593 3' -52.8 NC_005337.1 + 1040 0.66 0.969472
Target:  5'- uGCGCGG-GAGGcgGgcgGCggGAGgCCGg -3'
miRNA:   3'- -CGCGUCgCUUCuaCa--UGuaCUCgGGC- -5'
25593 3' -52.8 NC_005337.1 + 41612 0.66 0.966306
Target:  5'- uCGUGGCGAAGGaGgcCGUGGugcgacGCCCGg -3'
miRNA:   3'- cGCGUCGCUUCUaCauGUACU------CGGGC- -5'
25593 3' -52.8 NC_005337.1 + 35326 0.66 0.966306
Target:  5'- gGCGCcGCGGacccAGgcGUGCGUG-GCgCCGa -3'
miRNA:   3'- -CGCGuCGCU----UCuaCAUGUACuCG-GGC- -5'
25593 3' -52.8 NC_005337.1 + 60274 0.66 0.966306
Target:  5'- gGgGCAggcGCGggGGUGggaGUGGGCuuGg -3'
miRNA:   3'- -CgCGU---CGCuuCUACaugUACUCGggC- -5'
25593 3' -52.8 NC_005337.1 + 114318 0.66 0.962916
Target:  5'- uCGCGGCGccg--GUGCG-GAGCCCu -3'
miRNA:   3'- cGCGUCGCuucuaCAUGUaCUCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.