miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25593 5' -54.9 NC_005337.1 + 103866 0.66 0.937457
Target:  5'- -gCGGCaGUUCGCGGAGcgcgGCggCCUCGa -3'
miRNA:   3'- uaGCUG-CAAGUGCCUC----UGgaGGAGCg -5'
25593 5' -54.9 NC_005337.1 + 80241 0.66 0.937457
Target:  5'- gGUCGGCGUaCAUcuccagcggcaGGAGcucgaucuugGgCUCCUCGCg -3'
miRNA:   3'- -UAGCUGCAaGUG-----------CCUC----------UgGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 64668 0.66 0.937457
Target:  5'- cGUCGGCGaagaugcgCACGaccGAGcaguCCUCCUCGUc -3'
miRNA:   3'- -UAGCUGCaa------GUGC---CUCu---GGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 83155 0.66 0.937457
Target:  5'- cGUCGguGCGcUCGCGGuAGAuguucaCCUUCUUGCg -3'
miRNA:   3'- -UAGC--UGCaAGUGCC-UCU------GGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 73424 0.66 0.937457
Target:  5'- -aCGugGUgcUCGgGGAGAUCgugcgccaguUCUUCGCg -3'
miRNA:   3'- uaGCugCA--AGUgCCUCUGG----------AGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 25265 0.66 0.937457
Target:  5'- -aCGcccACGUUC-CGcGAGcCCUCCUCGg -3'
miRNA:   3'- uaGC---UGCAAGuGC-CUCuGGAGGAGCg -5'
25593 5' -54.9 NC_005337.1 + 55982 0.66 0.932472
Target:  5'- cGUCGugGcuaUGCGGGcGACCUCgCUgGCg -3'
miRNA:   3'- -UAGCugCaa-GUGCCU-CUGGAG-GAgCG- -5'
25593 5' -54.9 NC_005337.1 + 49532 0.66 0.932472
Target:  5'- cAUCGcGCGcgCGCgGGAGACCagcUCCggCGCc -3'
miRNA:   3'- -UAGC-UGCaaGUG-CCUCUGG---AGGa-GCG- -5'
25593 5' -54.9 NC_005337.1 + 46042 0.66 0.932472
Target:  5'- -aCGACGUcuUCGCaGcAGcccGCCUCCUCGa -3'
miRNA:   3'- uaGCUGCA--AGUGcC-UC---UGGAGGAGCg -5'
25593 5' -54.9 NC_005337.1 + 73123 0.66 0.932472
Target:  5'- -aUGACcaUCcCGGAcACCUUCUCGCa -3'
miRNA:   3'- uaGCUGcaAGuGCCUcUGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 90649 0.66 0.932472
Target:  5'- uGUUGAUGUagugCACGGGGcCCUUgUCGg -3'
miRNA:   3'- -UAGCUGCAa---GUGCCUCuGGAGgAGCg -5'
25593 5' -54.9 NC_005337.1 + 44716 0.66 0.932472
Target:  5'- cUCGACGU--GCGGccgGGACCUCUccaacgagCGCu -3'
miRNA:   3'- uAGCUGCAagUGCC---UCUGGAGGa-------GCG- -5'
25593 5' -54.9 NC_005337.1 + 59219 0.66 0.932472
Target:  5'- uUCGACGacgACGGGaACUUCCUgGCg -3'
miRNA:   3'- uAGCUGCaagUGCCUcUGGAGGAgCG- -5'
25593 5' -54.9 NC_005337.1 + 79424 0.66 0.932472
Target:  5'- -gCG-CGUUCggcACGGGGAUCUCgUCGa -3'
miRNA:   3'- uaGCuGCAAG---UGCCUCUGGAGgAGCg -5'
25593 5' -54.9 NC_005337.1 + 122729 0.66 0.927245
Target:  5'- uGUCGcACGUgccCGCGGAcGACCUgcggccacCCUgCGCu -3'
miRNA:   3'- -UAGC-UGCAa--GUGCCU-CUGGA--------GGA-GCG- -5'
25593 5' -54.9 NC_005337.1 + 132014 0.66 0.927245
Target:  5'- --gGGCGgaCACGGGGucGCUauacgacgcguUCCUCGCg -3'
miRNA:   3'- uagCUGCaaGUGCCUC--UGG-----------AGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 105478 0.66 0.927245
Target:  5'- -cCGGCc-UCGCGGu--UCUCCUCGCa -3'
miRNA:   3'- uaGCUGcaAGUGCCucuGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 61366 0.66 0.927245
Target:  5'- gGUUGAgCGUcuUCGCGGAcuggaaGAgCUCCgUCGCg -3'
miRNA:   3'- -UAGCU-GCA--AGUGCCU------CUgGAGG-AGCG- -5'
25593 5' -54.9 NC_005337.1 + 84989 0.66 0.927245
Target:  5'- gAUCc-CGUUCGCGGAGAUCacgCCcUGCa -3'
miRNA:   3'- -UAGcuGCAAGUGCCUCUGGa--GGaGCG- -5'
25593 5' -54.9 NC_005337.1 + 118659 0.66 0.921774
Target:  5'- -gCGACGcgCACGGAGACgaaCCUUugggGCa -3'
miRNA:   3'- uaGCUGCaaGUGCCUCUGga-GGAG----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.