miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25593 5' -54.9 NC_005337.1 + 132377 0.69 0.8034
Target:  5'- -gCGGgGUUCcCGGAGGCCgCCgagugCGCa -3'
miRNA:   3'- uaGCUgCAAGuGCCUCUGGaGGa----GCG- -5'
25593 5' -54.9 NC_005337.1 + 133688 0.71 0.707318
Target:  5'- -gUGGCGUUCGcCGGcGGCUUCCgCGCg -3'
miRNA:   3'- uaGCUGCAAGU-GCCuCUGGAGGaGCG- -5'
25593 5' -54.9 NC_005337.1 + 49633 0.71 0.727354
Target:  5'- --gGACGUugUCGCugauGGAGACCUCCgugaGCg -3'
miRNA:   3'- uagCUGCA--AGUG----CCUCUGGAGGag--CG- -5'
25593 5' -54.9 NC_005337.1 + 60998 0.7 0.737251
Target:  5'- cUCGAUGcu-GCGG--GCCUCCUCGCg -3'
miRNA:   3'- uAGCUGCaagUGCCucUGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 626 0.7 0.747056
Target:  5'- cGUCGGCGUccagCGCGGcGACgUCCU-GCa -3'
miRNA:   3'- -UAGCUGCAa---GUGCCuCUGgAGGAgCG- -5'
25593 5' -54.9 NC_005337.1 + 13371 0.7 0.775816
Target:  5'- -gCGGCGUUCAgacaucccuCcGAGGCCUUCUUGCu -3'
miRNA:   3'- uaGCUGCAAGU---------GcCUCUGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 74044 0.7 0.775816
Target:  5'- uUCGugGacUGCGGGGACCUCgUCuGCc -3'
miRNA:   3'- uAGCugCaaGUGCCUCUGGAGgAG-CG- -5'
25593 5' -54.9 NC_005337.1 + 33474 0.7 0.775816
Target:  5'- -aCGACGUgcgccaggcgCACGuAGACgUCCUCGUg -3'
miRNA:   3'- uaGCUGCAa---------GUGCcUCUGgAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 87205 0.69 0.785153
Target:  5'- cUUGACcUUCACGGAGACgUgcgaCUUCGCc -3'
miRNA:   3'- uAGCUGcAAGUGCCUCUGgA----GGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 21416 0.71 0.673728
Target:  5'- cGUCGACGUgggccgcggccagcUCGCGGAG-CUucgCCUCGUc -3'
miRNA:   3'- -UAGCUGCA--------------AGUGCCUCuGGa--GGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 19816 0.72 0.645949
Target:  5'- cGUCGACG-UCGuCGGGGAaccgCUCCUCGa -3'
miRNA:   3'- -UAGCUGCaAGU-GCCUCUg---GAGGAGCg -5'
25593 5' -54.9 NC_005337.1 + 39986 0.72 0.636664
Target:  5'- -aCGGCGUgaugacgcaggaggcCACGGAGGCCaUCCgCGCg -3'
miRNA:   3'- uaGCUGCAa--------------GUGCCUCUGG-AGGaGCG- -5'
25593 5' -54.9 NC_005337.1 + 9450 0.8 0.254568
Target:  5'- cUCGAUGcccgUGCGGAGcACCUCCUCGCu -3'
miRNA:   3'- uAGCUGCaa--GUGCCUC-UGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 103587 0.77 0.385413
Target:  5'- -gCGACGggUACGu-GGCCUCCUCGCu -3'
miRNA:   3'- uaGCUGCaaGUGCcuCUGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 110440 0.77 0.40244
Target:  5'- aGUCGACGaaCGCGGgcaGGACCUCCgaggCGUg -3'
miRNA:   3'- -UAGCUGCaaGUGCC---UCUGGAGGa---GCG- -5'
25593 5' -54.9 NC_005337.1 + 31722 0.76 0.419936
Target:  5'- -gCG-CGUaCGCGGugacGACCUCCUCGCg -3'
miRNA:   3'- uaGCuGCAaGUGCCu---CUGGAGGAGCG- -5'
25593 5' -54.9 NC_005337.1 + 10023 0.75 0.494222
Target:  5'- -aCGAUGUcCuCGGGGACCUCCaCGCa -3'
miRNA:   3'- uaGCUGCAaGuGCCUCUGGAGGaGCG- -5'
25593 5' -54.9 NC_005337.1 + 24327 0.75 0.503937
Target:  5'- cGUCGACGgcagCACGGAGACCgcggUGCa -3'
miRNA:   3'- -UAGCUGCaa--GUGCCUCUGGaggaGCG- -5'
25593 5' -54.9 NC_005337.1 + 20871 0.74 0.513733
Target:  5'- -cCGACGUUUuuuuaggauuuuGCGGAGGCUUCUugUCGCa -3'
miRNA:   3'- uaGCUGCAAG------------UGCCUCUGGAGG--AGCG- -5'
25593 5' -54.9 NC_005337.1 + 101218 0.74 0.523607
Target:  5'- uUCG-CGgaggUCGCGGAGGCgUCCgcgCGCg -3'
miRNA:   3'- uAGCuGCa---AGUGCCUCUGgAGGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.