miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25594 5' -54.4 NC_005337.1 + 109923 0.65 0.944514
Target:  5'- uCGCGUGGGCAUGcucuccagcGCGgUCAGccacuccUCGUUCa -3'
miRNA:   3'- -GCGCGCUUGUAC---------CGCaAGUC-------AGCGAG- -5'
25594 5' -54.4 NC_005337.1 + 76580 0.65 0.944514
Target:  5'- gGCGCGAACugcaucAUGGUGga-GGUCcacggcuGCUCg -3'
miRNA:   3'- gCGCGCUUG------UACCGCaagUCAG-------CGAG- -5'
25594 5' -54.4 NC_005337.1 + 72608 0.66 0.94032
Target:  5'- gCGCGCGGGCGUGGUGgugcc-CGC-Ca -3'
miRNA:   3'- -GCGCGCUUGUACCGCaagucaGCGaG- -5'
25594 5' -54.4 NC_005337.1 + 56203 0.66 0.94032
Target:  5'- aCGCGCGcuaccugcagGACGUGGCGgaggggCGGaUCGUg- -3'
miRNA:   3'- -GCGCGC----------UUGUACCGCaa----GUC-AGCGag -5'
25594 5' -54.4 NC_005337.1 + 109445 0.66 0.94032
Target:  5'- aCGCGCcgcucGAGCAcGGCGaggaAGUCGCg- -3'
miRNA:   3'- -GCGCG-----CUUGUaCCGCaag-UCAGCGag -5'
25594 5' -54.4 NC_005337.1 + 94569 0.66 0.94032
Target:  5'- aGCaCGAAUAUGGUGcUCAGcuUCGUUUg -3'
miRNA:   3'- gCGcGCUUGUACCGCaAGUC--AGCGAG- -5'
25594 5' -54.4 NC_005337.1 + 86652 0.66 0.94032
Target:  5'- -cCGgGAACGUGGCuUUCAG-CGCg- -3'
miRNA:   3'- gcGCgCUUGUACCGcAAGUCaGCGag -5'
25594 5' -54.4 NC_005337.1 + 31812 0.66 0.94032
Target:  5'- aGCGgGGACuucugcuUGGCGUgcUCGGcCGCg- -3'
miRNA:   3'- gCGCgCUUGu------ACCGCA--AGUCaGCGag -5'
25594 5' -54.4 NC_005337.1 + 30261 0.66 0.935427
Target:  5'- gGCGCGGGCA-GGCGguccaCGG-CGCg- -3'
miRNA:   3'- gCGCGCUUGUaCCGCaa---GUCaGCGag -5'
25594 5' -54.4 NC_005337.1 + 103897 0.66 0.935427
Target:  5'- cCGCGCGcGACAUGGaCGUgcUCcGcgUGCUCc -3'
miRNA:   3'- -GCGCGC-UUGUACC-GCA--AGuCa-GCGAG- -5'
25594 5' -54.4 NC_005337.1 + 56456 0.66 0.935427
Target:  5'- aGCGCGGugAUGGUGgcCAGcgaccCGCg- -3'
miRNA:   3'- gCGCGCUugUACCGCaaGUCa----GCGag -5'
25594 5' -54.4 NC_005337.1 + 101137 0.66 0.935427
Target:  5'- uGCGCGGACcUGGUGgaCAa--GCUCu -3'
miRNA:   3'- gCGCGCUUGuACCGCaaGUcagCGAG- -5'
25594 5' -54.4 NC_005337.1 + 70163 0.66 0.930286
Target:  5'- aGCGUGAGCAUGcCGa-CGGUgcCGCUCu -3'
miRNA:   3'- gCGCGCUUGUACcGCaaGUCA--GCGAG- -5'
25594 5' -54.4 NC_005337.1 + 118936 0.66 0.930286
Target:  5'- uCGCGCGGGCGcaGCGUgc-GUCGCg- -3'
miRNA:   3'- -GCGCGCUUGUacCGCAaguCAGCGag -5'
25594 5' -54.4 NC_005337.1 + 128295 0.66 0.930286
Target:  5'- aCGCGCGcGCcUGGCGcc--GUCuGCUCg -3'
miRNA:   3'- -GCGCGCuUGuACCGCaaguCAG-CGAG- -5'
25594 5' -54.4 NC_005337.1 + 38261 0.66 0.930286
Target:  5'- gCGCGCGuucGCGcucgcGGCGUUCc--CGCUCg -3'
miRNA:   3'- -GCGCGCu--UGUa----CCGCAAGucaGCGAG- -5'
25594 5' -54.4 NC_005337.1 + 65132 0.66 0.928695
Target:  5'- aCGCGCGAgacgcgcucccaguACAUGGCGUggcucUUGGUCucgccCUCc -3'
miRNA:   3'- -GCGCGCU--------------UGUACCGCA-----AGUCAGc----GAG- -5'
25594 5' -54.4 NC_005337.1 + 95612 0.66 0.927082
Target:  5'- aGCGCGc-CAUGGCGgcguccgugggcgCGGgccCGCUCg -3'
miRNA:   3'- gCGCGCuuGUACCGCaa-----------GUCa--GCGAG- -5'
25594 5' -54.4 NC_005337.1 + 39425 0.66 0.924896
Target:  5'- aCGCGCGGGCGcc-CGcUCGGgccgCGCUCg -3'
miRNA:   3'- -GCGCGCUUGUaccGCaAGUCa---GCGAG- -5'
25594 5' -54.4 NC_005337.1 + 127391 0.66 0.924896
Target:  5'- gCGCGCGcGACAUGGaCGggCGcaCGCUg -3'
miRNA:   3'- -GCGCGC-UUGUACC-GCaaGUcaGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.