miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25595 3' -57.2 NC_005337.1 + 558 0.67 0.782393
Target:  5'- -----cGCCaCCGGCcgcGCGUACGCCg-- -3'
miRNA:   3'- acucuuCGG-GGCCG---UGCAUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 558 0.67 0.782393
Target:  5'- -----cGCCaCCGGCcgcGCGUACGCCg-- -3'
miRNA:   3'- acucuuCGG-GGCCG---UGCAUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 589 0.67 0.782393
Target:  5'- -cGGAAGCCgCCGGCGa--ACGCCa-- -3'
miRNA:   3'- acUCUUCGG-GGCCGUgcaUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 589 0.67 0.782393
Target:  5'- -cGGAAGCCgCCGGCGa--ACGCCa-- -3'
miRNA:   3'- acUCUUCGG-GGCCGUgcaUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 2821 0.67 0.763563
Target:  5'- gGAGAAGCCCaGGC-CGaGCGCg--- -3'
miRNA:   3'- aCUCUUCGGGgCCGuGCaUGCGgaag -5'
25595 3' -57.2 NC_005337.1 + 3009 0.68 0.704545
Target:  5'- gGAcGGGCUCCGGCagcGCGUGCGCg--- -3'
miRNA:   3'- aCUcUUCGGGGCCG---UGCAUGCGgaag -5'
25595 3' -57.2 NC_005337.1 + 3390 0.67 0.763563
Target:  5'- cGAGAAGC----GCGCGUGCGCCaUCu -3'
miRNA:   3'- aCUCUUCGgggcCGUGCAUGCGGaAG- -5'
25595 3' -57.2 NC_005337.1 + 8950 0.7 0.571517
Target:  5'- aGAGAGGCCgCGuuCACGUuuGCGCCUg- -3'
miRNA:   3'- aCUCUUCGGgGCc-GUGCA--UGCGGAag -5'
25595 3' -57.2 NC_005337.1 + 10295 0.66 0.843542
Target:  5'- gGAGggGCCUCGGaaCACc-AUGCCUg- -3'
miRNA:   3'- aCUCuuCGGGGCC--GUGcaUGCGGAag -5'
25595 3' -57.2 NC_005337.1 + 16331 0.68 0.744263
Target:  5'- uUGAuGAGGgUCCGGUcguccuCGUcaGCGCCUUCg -3'
miRNA:   3'- -ACU-CUUCgGGGCCGu-----GCA--UGCGGAAG- -5'
25595 3' -57.2 NC_005337.1 + 17923 0.67 0.782393
Target:  5'- uUGAGGAcGCgggucauggCCCGGCGC-UGCGCCcgCa -3'
miRNA:   3'- -ACUCUU-CG---------GGGCCGUGcAUGCGGaaG- -5'
25595 3' -57.2 NC_005337.1 + 18719 0.79 0.193604
Target:  5'- cGAGGAGCUgCGGCGCGcugGCGCCUc- -3'
miRNA:   3'- aCUCUUCGGgGCCGUGCa--UGCGGAag -5'
25595 3' -57.2 NC_005337.1 + 22069 0.7 0.622711
Target:  5'- gGuGAAGCgCCUGGC-CGUacuGCGCCUgcUCg -3'
miRNA:   3'- aCuCUUCG-GGGCCGuGCA---UGCGGA--AG- -5'
25595 3' -57.2 NC_005337.1 + 22331 0.76 0.279189
Target:  5'- cGAGAguGGCCaCCGGaCACG-ACGCCUUUu -3'
miRNA:   3'- aCUCU--UCGG-GGCC-GUGCaUGCGGAAG- -5'
25595 3' -57.2 NC_005337.1 + 23006 0.69 0.653574
Target:  5'- cGAGcauGCUgCGGCACuUGCGCCgcgUCg -3'
miRNA:   3'- aCUCuu-CGGgGCCGUGcAUGCGGa--AG- -5'
25595 3' -57.2 NC_005337.1 + 23792 0.68 0.704545
Target:  5'- cGAGcuGgCCCGGUACcUGCGCCg-- -3'
miRNA:   3'- aCUCuuCgGGGCCGUGcAUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 29872 0.67 0.790692
Target:  5'- gGAGccGUCCuCGGCGaagggcuugugucCGUACGCCguggUCa -3'
miRNA:   3'- aCUCuuCGGG-GCCGU-------------GCAUGCGGa---AG- -5'
25595 3' -57.2 NC_005337.1 + 30564 0.72 0.481607
Target:  5'- cGGGGAGCUCCccguggaGGC-CGUGCGCCa-- -3'
miRNA:   3'- aCUCUUCGGGG-------CCGuGCAUGCGGaag -5'
25595 3' -57.2 NC_005337.1 + 35086 0.66 0.818344
Target:  5'- --cGggGCCCUGGCGC-UGCaugucgGUCUUCu -3'
miRNA:   3'- acuCuuCGGGGCCGUGcAUG------CGGAAG- -5'
25595 3' -57.2 NC_005337.1 + 35721 0.67 0.782393
Target:  5'- gUGAcGAAGUCCCGGCugGcaagcacGCgGCCgUCg -3'
miRNA:   3'- -ACU-CUUCGGGGCCGugCa------UG-CGGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.