miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25595 5' -55.3 NC_005337.1 + 29209 0.67 0.806153
Target:  5'- -aGGAGGcGCUGCgcagcgccgCGCGGCCgggCGUc -3'
miRNA:   3'- aaCUUCCaCGACGa--------GUGCCGGaa-GUA- -5'
25595 5' -55.3 NC_005337.1 + 58595 0.67 0.777669
Target:  5'- --cGAGaUGCUGCugcuguacuUCGCGGCCUUCGg -3'
miRNA:   3'- aacUUCcACGACG---------AGUGCCGGAAGUa -5'
25595 5' -55.3 NC_005337.1 + 73868 0.68 0.757951
Target:  5'- -aGAAGG-GCggGCUCAUGGCCa---- -3'
miRNA:   3'- aaCUUCCaCGa-CGAGUGCCGGaagua -5'
25595 5' -55.3 NC_005337.1 + 116927 0.68 0.757951
Target:  5'- -aGAcGGUGCUGCUgCGCGuGCCguaccUCAa -3'
miRNA:   3'- aaCUuCCACGACGA-GUGC-CGGa----AGUa -5'
25595 5' -55.3 NC_005337.1 + 30648 0.68 0.747904
Target:  5'- -cGAGGGagGCUGCcgcgUCGCGGgCCUUCc- -3'
miRNA:   3'- aaCUUCCa-CGACG----AGUGCC-GGAAGua -5'
25595 5' -55.3 NC_005337.1 + 76598 0.68 0.737746
Target:  5'- gUGGAGGUccacgGCUGCUCGaugaGcGCCUUCu- -3'
miRNA:   3'- aACUUCCA-----CGACGAGUg---C-CGGAAGua -5'
25595 5' -55.3 NC_005337.1 + 74870 0.68 0.727488
Target:  5'- -cGcGGGcaUGCUGgUCACGGCCaUCGUg -3'
miRNA:   3'- aaCuUCC--ACGACgAGUGCCGGaAGUA- -5'
25595 5' -55.3 NC_005337.1 + 52109 0.69 0.706712
Target:  5'- gUGcAGGUGCgcgacgggccgGC-CAUGGCCUUCGUg -3'
miRNA:   3'- aACuUCCACGa----------CGaGUGCCGGAAGUA- -5'
25595 5' -55.3 NC_005337.1 + 125721 0.69 0.696215
Target:  5'- -cGAGGGUGUUGCUgCGCuGGCCg---- -3'
miRNA:   3'- aaCUUCCACGACGA-GUG-CCGGaagua -5'
25595 5' -55.3 NC_005337.1 + 59020 0.69 0.68566
Target:  5'- -gGAguGGGUGCg---CGCGGCCUUCAc -3'
miRNA:   3'- aaCU--UCCACGacgaGUGCCGGAAGUa -5'
25595 5' -55.3 NC_005337.1 + 8537 0.69 0.664414
Target:  5'- -aGAuacuuGGUGUUGUUCACGGCCagCGc -3'
miRNA:   3'- aaCUu----CCACGACGAGUGCCGGaaGUa -5'
25595 5' -55.3 NC_005337.1 + 24626 0.69 0.664414
Target:  5'- -cGGAGGUgacggaaaaGCUgguggacgcGCUCGCGGCCUUCc- -3'
miRNA:   3'- aaCUUCCA---------CGA---------CGAGUGCCGGAAGua -5'
25595 5' -55.3 NC_005337.1 + 99565 0.7 0.653744
Target:  5'- -aGGAGGcccugcgGCUGCUCguGCGGCgCUUCGg -3'
miRNA:   3'- aaCUUCCa------CGACGAG--UGCCG-GAAGUa -5'
25595 5' -55.3 NC_005337.1 + 23176 0.71 0.600293
Target:  5'- gUGGAGGcGCUGCUgGaCGGCCUggcgCAc -3'
miRNA:   3'- aACUUCCaCGACGAgU-GCCGGAa---GUa -5'
25595 5' -55.3 NC_005337.1 + 74911 0.71 0.600293
Target:  5'- gUGAuGGcGCgGCUgGCGGCCUUCGc -3'
miRNA:   3'- aACUuCCaCGaCGAgUGCCGGAAGUa -5'
25595 5' -55.3 NC_005337.1 + 85601 1.03 0.005161
Target:  5'- gUUGAAGGUGCUGCUCACGGCCUUCAUc -3'
miRNA:   3'- -AACUUCCACGACGAGUGCCGGAAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.