miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
256 3' -50.3 AC_000008.1 + 14620 0.66 0.865753
Target:  5'- aGCUGAAAUac-GAGugGGUGGAGuucacGCu -3'
miRNA:   3'- -CGAUUUUAcuuCUCugCCGCCUC-----CGc -5'
256 3' -50.3 AC_000008.1 + 5503 0.66 0.857023
Target:  5'- aGCUGAuuucAGUGggG-GugGGagaaGuGGGGCGa -3'
miRNA:   3'- -CGAUU----UUACuuCuCugCCg---C-CUCCGC- -5'
256 3' -50.3 AC_000008.1 + 20213 0.66 0.857023
Target:  5'- aCUGAcGGUGGu--GAUGGUGGGGGCu -3'
miRNA:   3'- cGAUU-UUACUucuCUGCCGCCUCCGc -5'
256 3' -50.3 AC_000008.1 + 12652 0.66 0.857023
Target:  5'- gGCUG--GUGggG-GAUGuGCGcGAGGCc -3'
miRNA:   3'- -CGAUuuUACuuCuCUGC-CGC-CUCCGc -5'
256 3' -50.3 AC_000008.1 + 15023 0.66 0.856135
Target:  5'- aGCUugaAAGAUGAcaccgaacagggcGGGGGUGGCGcAGGCGg -3'
miRNA:   3'- -CGA---UUUUACU-------------UCUCUGCCGCcUCCGC- -5'
256 3' -50.3 AC_000008.1 + 13155 0.66 0.848025
Target:  5'- cGCUGGGGcagGAGGAcACGGgcagccUGGAGGCa -3'
miRNA:   3'- -CGAUUUUa--CUUCUcUGCC------GCCUCCGc -5'
256 3' -50.3 AC_000008.1 + 6692 0.67 0.809573
Target:  5'- gGCaUGGGGUGGGuGAG-C-GCGGAGGCGu -3'
miRNA:   3'- -CG-AUUUUACUU-CUCuGcCGCCUCCGC- -5'
256 3' -50.3 AC_000008.1 + 9807 0.68 0.756864
Target:  5'- -gUAGGcgGucuuGAGACGGCGGAuGGuCGa -3'
miRNA:   3'- cgAUUUuaCuu--CUCUGCCGCCU-CC-GC- -5'
256 3' -50.3 AC_000008.1 + 23891 0.68 0.756864
Target:  5'- -------cGggGAGGCGGCGGcgacgGGGaCGg -3'
miRNA:   3'- cgauuuuaCuuCUCUGCCGCC-----UCC-GC- -5'
256 3' -50.3 AC_000008.1 + 18365 0.68 0.756864
Target:  5'- gGCUGGc--GAcGGcGACGGCGGcGGCGg -3'
miRNA:   3'- -CGAUUuuaCUuCU-CUGCCGCCuCCGC- -5'
256 3' -50.3 AC_000008.1 + 19692 0.68 0.756864
Target:  5'- gGCggcAGUGccGGGucgGCGGCGGuGGCGa -3'
miRNA:   3'- -CGauuUUACuuCUC---UGCCGCCuCCGC- -5'
256 3' -50.3 AC_000008.1 + 5999 0.68 0.744722
Target:  5'- cCUGAAggGggGcuauaaaAGGgGGUGGGGGCGc -3'
miRNA:   3'- cGAUUUuaCuuC-------UCUgCCGCCUCCGC- -5'
256 3' -50.3 AC_000008.1 + 2166 0.69 0.700541
Target:  5'- aGC-AGGAgGAAGccAGGCGGCGGcGGCa -3'
miRNA:   3'- -CGaUUUUaCUUC--UCUGCCGCCuCCGc -5'
256 3' -50.3 AC_000008.1 + 11793 0.71 0.604821
Target:  5'- gGCggcaucgGuGGAGGCGGUGGuGGCGa -3'
miRNA:   3'- -CGauuuua-CuUCUCUGCCGCCuCCGC- -5'
256 3' -50.3 AC_000008.1 + 9103 0.72 0.526442
Target:  5'- cGCUGAAA-GAGGuaguuGAgGGUGGuGGCGg -3'
miRNA:   3'- -CGAUUUUaCUUCu----CUgCCGCCuCCGC- -5'
256 3' -50.3 AC_000008.1 + 32089 0.8 0.193949
Target:  5'- gGCUGcAGcggcUGAAGcGGCGGCGGAGGCu -3'
miRNA:   3'- -CGAUuUU----ACUUCuCUGCCGCCUCCGc -5'
256 3' -50.3 AC_000008.1 + 16146 1.11 0.001491
Target:  5'- uGCUAAAAUGAAGAGACGGCGGAGGCGc -3'
miRNA:   3'- -CGAUUUUACUUCUCUGCCGCCUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.