Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
256 | 5' | -64.7 | AC_000008.1 | + | 26799 | 0.73 | 0.061332 |
Target: 5'- -gCGCCugCGaaacuaCGCCGucuucGCCCGGCACg -3' miRNA: 3'- caGCGGugGCg-----GCGGC-----UGGGCCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 26961 | 0.67 | 0.168957 |
Target: 5'- cUCGCCGCCaCCGUggagCGAgCCGGaCGCg -3' miRNA: 3'- cAGCGGUGGcGGCG----GCUgGGCC-GUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 19566 | 0.67 | 0.164549 |
Target: 5'- --gGCCGCuCGUCGCCugGACCUggggGGCACa -3' miRNA: 3'- cagCGGUG-GCGGCGG--CUGGG----CCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 25431 | 0.68 | 0.151535 |
Target: 5'- -cCaCCACCGCCGCCGGCaucaccuggauguCCaGGUACa -3' miRNA: 3'- caGcGGUGGCGGCGGCUG-------------GG-CCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 23699 | 0.68 | 0.136127 |
Target: 5'- -gUGCCACCGCCagcccagguCCGGCCCcagcugccuccagGGCGCg -3' miRNA: 3'- caGCGGUGGCGGc--------GGCUGGG-------------CCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 18114 | 0.69 | 0.129323 |
Target: 5'- -aCGCgCGCCGCCGCCGG--UGGUGCg -3' miRNA: 3'- caGCG-GUGGCGGCGGCUggGCCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 21681 | 0.69 | 0.129323 |
Target: 5'- -gCGCCGCCGCCaCUGGCgCC-GCGCUc -3' miRNA: 3'- caGCGGUGGCGGcGGCUG-GGcCGUGA- -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 33704 | 0.7 | 0.109853 |
Target: 5'- -cUGCUccuGCCGCCGCCG-CCUGGCu-- -3' miRNA: 3'- caGCGG---UGGCGGCGGCuGGGCCGuga -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 17262 | 0.7 | 0.098435 |
Target: 5'- aUCGCgGaCCGCUGgCGGCgCGGCGCa -3' miRNA: 3'- cAGCGgU-GGCGGCgGCUGgGCCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 19382 | 0.67 | 0.168957 |
Target: 5'- cGUUGCgCGCCGCCGCCG--CUGGaUACa -3' miRNA: 3'- -CAGCG-GUGGCGGCGGCugGGCC-GUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 19676 | 0.67 | 0.172105 |
Target: 5'- -cCGCCGCCGCgcguugggcggcagUGCCGGgUCGGCGg- -3' miRNA: 3'- caGCGGUGGCG--------------GCGGCUgGGCCGUga -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 23802 | 0.66 | 0.213034 |
Target: 5'- aUCGCCGCUGCCcgugccaGCCagGGCCCuuugcaGGCugUg -3' miRNA: 3'- cAGCGGUGGCGG-------CGG--CUGGG------CCGugA- -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 9185 | 0.73 | 0.059632 |
Target: 5'- -cUGCCGCUGCCGCUGcCgCCGGUGCa -3' miRNA: 3'- caGCGGUGGCGGCGGCuG-GGCCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 11994 | 0.76 | 0.034818 |
Target: 5'- -cCGUCGCCGCCGCCucCCCgGGCGCc -3' miRNA: 3'- caGCGGUGGCGGCGGcuGGG-CCGUGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 26142 | 0.72 | 0.06861 |
Target: 5'- -cCGCCGcCCGCUGCCGcccGCCaCGGUGCUc -3' miRNA: 3'- caGCGGU-GGCGGCGGC---UGG-GCCGUGA- -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 8649 | 0.66 | 0.18766 |
Target: 5'- cGUCGgCGCCGCgCGCgGGCaggagCUGGUGCUg -3' miRNA: 3'- -CAGCgGUGGCG-GCGgCUG-----GGCCGUGA- -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 17838 | 0.66 | 0.202862 |
Target: 5'- aUCGCCGCgGCgauuggCGCCGuGCCCGGaauuGCa -3' miRNA: 3'- cAGCGGUGgCG------GCGGC-UGGGCCg---UGa -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 33229 | 0.66 | 0.208162 |
Target: 5'- -cUGCUGCCGCCGCCGcUCCGuccuGCAg- -3' miRNA: 3'- caGCGGUGGCGGCGGCuGGGC----CGUga -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 17516 | 0.72 | 0.072555 |
Target: 5'- -cCGCCGCCGUCGCCGucgccaGCCCGuGCu-- -3' miRNA: 3'- caGCGGUGGCGGCGGC------UGGGC-CGuga -5' |
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256 | 5' | -64.7 | AC_000008.1 | + | 3585 | 0.66 | 0.213581 |
Target: 5'- uUUGCagcaGCCGCCGCCG-CCaUGaGCACc -3' miRNA: 3'- cAGCGg---UGGCGGCGGCuGG-GC-CGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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