miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 80306 1.08 0.001823
Target:  5'- cGUGCGGGUCCAAGCUAGACGCCACCGc -3'
miRNA:   3'- -CACGCCCAGGUUCGAUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 116441 0.75 0.304861
Target:  5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3'
miRNA:   3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 97020 0.75 0.291093
Target:  5'- cGUGCGGGUUC-GGCaAGACGCUgACCGc -3'
miRNA:   3'- -CACGCCCAGGuUCGaUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 36756 0.74 0.341444
Target:  5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3'
miRNA:   3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 36535 0.74 0.364872
Target:  5'- -cGCGGGcgUCCccggcGGCUGGGCGgCGCCGg -3'
miRNA:   3'- caCGCCC--AGGu----UCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 38651 0.74 0.349131
Target:  5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3'
miRNA:   3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 38072 0.73 0.397796
Target:  5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3'
miRNA:   3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 44417 0.73 0.381097
Target:  5'- -cGUGGGUCUgccgGAGCgccgGGAgcCGCCGCCGg -3'
miRNA:   3'- caCGCCCAGG----UUCGa---UCU--GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 47467 0.72 0.459775
Target:  5'- -gGCGGGUCCGugucGCUgccgucgcgGGACcuGCCGCCGc -3'
miRNA:   3'- caCGCCCAGGUu---CGA---------UCUG--CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 66571 0.71 0.478409
Target:  5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3'
miRNA:   3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5'
25600 3' -58.2 NC_005337.1 + 60882 0.71 0.469045
Target:  5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3'
miRNA:   3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 131381 0.71 0.507034
Target:  5'- -gGaCGuGGUCUGcAGCcGGACGCCGCCGg -3'
miRNA:   3'- caC-GC-CCAGGU-UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 76740 0.71 0.507034
Target:  5'- cGUGCaugcGGUCCAGGCccaggaAGACGCgCGCCa -3'
miRNA:   3'- -CACGc---CCAGGUUCGa-----UCUGCG-GUGGc -5'
25600 3' -58.2 NC_005337.1 + 127792 0.71 0.487865
Target:  5'- gGUGCGGGUgCu-GgUGGACGCCGgCGc -3'
miRNA:   3'- -CACGCCCAgGuuCgAUCUGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 71472 0.71 0.478409
Target:  5'- -cGCaGGUCUc-GCUGGACGCCacGCCGg -3'
miRNA:   3'- caCGcCCAGGuuCGAUCUGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 98988 0.71 0.478409
Target:  5'- -aGCGGGgCCGAGgUGGA-GCCGCCc -3'
miRNA:   3'- caCGCCCaGGUUCgAUCUgCGGUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.