Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25600 | 3' | -58.2 | NC_005337.1 | + | 80306 | 1.08 | 0.001823 |
Target: 5'- cGUGCGGGUCCAAGCUAGACGCCACCGc -3' miRNA: 3'- -CACGCCCAGGUUCGAUCUGCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 88534 | 0.78 | 0.213319 |
Target: 5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3' miRNA: 3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 97020 | 0.75 | 0.291093 |
Target: 5'- cGUGCGGGUUC-GGCaAGACGCUgACCGc -3' miRNA: 3'- -CACGCCCAGGuUCGaUCUGCGG-UGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 116441 | 0.75 | 0.304861 |
Target: 5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3' miRNA: 3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 36756 | 0.74 | 0.341444 |
Target: 5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3' miRNA: 3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 38651 | 0.74 | 0.349131 |
Target: 5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3' miRNA: 3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 36535 | 0.74 | 0.364872 |
Target: 5'- -cGCGGGcgUCCccggcGGCUGGGCGgCGCCGg -3' miRNA: 3'- caCGCCC--AGGu----UCGAUCUGCgGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 44417 | 0.73 | 0.381097 |
Target: 5'- -cGUGGGUCUgccgGAGCgccgGGAgcCGCCGCCGg -3' miRNA: 3'- caCGCCCAGG----UUCGa---UCU--GCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 83098 | 0.73 | 0.397796 |
Target: 5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3' miRNA: 3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 38072 | 0.73 | 0.397796 |
Target: 5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3' miRNA: 3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 47467 | 0.72 | 0.459775 |
Target: 5'- -gGCGGGUCCGugucGCUgccgucgcgGGACcuGCCGCCGc -3' miRNA: 3'- caCGCCCAGGUu---CGA---------UCUG--CGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 118507 | 0.72 | 0.459775 |
Target: 5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3' miRNA: 3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 60882 | 0.71 | 0.469045 |
Target: 5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3' miRNA: 3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 66571 | 0.71 | 0.478409 |
Target: 5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3' miRNA: 3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 71472 | 0.71 | 0.478409 |
Target: 5'- -cGCaGGUCUc-GCUGGACGCCacGCCGg -3' miRNA: 3'- caCGcCCAGGuuCGAUCUGCGG--UGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 98988 | 0.71 | 0.478409 |
Target: 5'- -aGCGGGgCCGAGgUGGA-GCCGCCc -3' miRNA: 3'- caCGCCCaGGUUCgAUCUgCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 127792 | 0.71 | 0.487865 |
Target: 5'- gGUGCGGGUgCu-GgUGGACGCCGgCGc -3' miRNA: 3'- -CACGCCCAgGuuCgAUCUGCGGUgGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 131381 | 0.71 | 0.507034 |
Target: 5'- -gGaCGuGGUCUGcAGCcGGACGCCGCCGg -3' miRNA: 3'- caC-GC-CCAGGU-UCGaUCUGCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 76740 | 0.71 | 0.507034 |
Target: 5'- cGUGCaugcGGUCCAGGCccaggaAGACGCgCGCCa -3' miRNA: 3'- -CACGc---CCAGGUUCGa-----UCUGCG-GUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 67340 | 0.71 | 0.507034 |
Target: 5'- -cGCGcGUCCGGGUccGugGCCACCa -3' miRNA: 3'- caCGCcCAGGUUCGauCugCGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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