Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25600 | 3' | -58.2 | NC_005337.1 | + | 107162 | 0.7 | 0.526516 |
Target: 5'- -cGCGuGG-CCAAGCggcugcuggAGAUGCCGCUGg -3' miRNA: 3'- caCGC-CCaGGUUCGa--------UCUGCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 74464 | 0.7 | 0.536363 |
Target: 5'- -gGCGGGUUCGAcgucucGCUGGACGCguaCAUCGu -3' miRNA: 3'- caCGCCCAGGUU------CGAUCUGCG---GUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 105196 | 0.7 | 0.536363 |
Target: 5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3' miRNA: 3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 6908 | 0.7 | 0.546273 |
Target: 5'- -cGCGGGUCCGcgccGGCgcgcAGcaucauCGCCACCa -3' miRNA: 3'- caCGCCCAGGU----UCGa---UCu-----GCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 36147 | 0.7 | 0.55624 |
Target: 5'- cGUGCGGGUCCAuGCUc-ACcCCGCUGc -3' miRNA: 3'- -CACGCCCAGGUuCGAucUGcGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 116010 | 0.7 | 0.56626 |
Target: 5'- cGUGCGGcucaCCGAGCaggUGGACGUgACCGu -3' miRNA: 3'- -CACGCCca--GGUUCG---AUCUGCGgUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 84273 | 0.7 | 0.56626 |
Target: 5'- cUGCGaGGaCCAGGCUGGucuuCGCCAggucCCGg -3' miRNA: 3'- cACGC-CCaGGUUCGAUCu---GCGGU----GGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 108546 | 0.7 | 0.576325 |
Target: 5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3' miRNA: 3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 129613 | 0.69 | 0.58643 |
Target: 5'- -cGUGGagcucGUCCGgcGGCUcGugGCCGCCGg -3' miRNA: 3'- caCGCC-----CAGGU--UCGAuCugCGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 93263 | 0.69 | 0.596568 |
Target: 5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3' miRNA: 3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 131211 | 0.69 | 0.596568 |
Target: 5'- -cGCGGaGUCCGcGCUAGcCGCCGgUGu -3' miRNA: 3'- caCGCC-CAGGUuCGAUCuGCGGUgGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 29591 | 0.69 | 0.596568 |
Target: 5'- -gGCGGuGUCCGAcGC-GGACGCCAUg- -3' miRNA: 3'- caCGCC-CAGGUU-CGaUCUGCGGUGgc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 101471 | 0.69 | 0.606732 |
Target: 5'- aGUGCGuGGaCCAGGCgcAGGCGCUGCUc -3' miRNA: 3'- -CACGC-CCaGGUUCGa-UCUGCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 51538 | 0.69 | 0.606732 |
Target: 5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3' miRNA: 3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 59901 | 0.69 | 0.613858 |
Target: 5'- -aGCGGGUCCcGGa-AGACccgcgugcugcccaGCCGCCGg -3' miRNA: 3'- caCGCCCAGGuUCgaUCUG--------------CGGUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 57279 | 0.69 | 0.616914 |
Target: 5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3' miRNA: 3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 59298 | 0.69 | 0.616914 |
Target: 5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3' miRNA: 3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 44657 | 0.69 | 0.62099 |
Target: 5'- -aGCGGGcgcuacgugggcgacUCCGAGaUAGGCGUgGCCGa -3' miRNA: 3'- caCGCCC---------------AGGUUCgAUCUGCGgUGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 45030 | 0.69 | 0.62099 |
Target: 5'- -aGCGuGGacugccgcacgaugcUCCGcaAGCUGGGCGCCgGCCGg -3' miRNA: 3'- caCGC-CC---------------AGGU--UCGAUCUGCGG-UGGC- -5' |
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25600 | 3' | -58.2 | NC_005337.1 | + | 117288 | 0.69 | 0.627108 |
Target: 5'- -gGCgGGGUCCcgcgugcugGAGgUGGACGCCuCCGc -3' miRNA: 3'- caCG-CCCAGG---------UUCgAUCUGCGGuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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