miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 36936 0.68 0.647499
Target:  5'- -gGCGGGUacuucaCCAGGaaccGCGCCACCGc -3'
miRNA:   3'- caCGCCCA------GGUUCgaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 117012 0.68 0.647499
Target:  5'- cGUGCGccaGG-CCAcGCUccGGGCGCUGCCGa -3'
miRNA:   3'- -CACGC---CCaGGUuCGA--UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 4786 0.68 0.657681
Target:  5'- -cGCGGGUCCGuGC---ACGCCcCCGu -3'
miRNA:   3'- caCGCCCAGGUuCGaucUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 58657 0.68 0.657681
Target:  5'- -cGCGGGacacgcgcgCCAAGCUcguGGACGCCuucaacGCCu -3'
miRNA:   3'- caCGCCCa--------GGUUCGA---UCUGCGG------UGGc -5'
25600 3' -58.2 NC_005337.1 + 25064 0.68 0.657681
Target:  5'- cGUGCGGGcggcguucgUCAAGCUGcgcGACGCCGagcuCCGc -3'
miRNA:   3'- -CACGCCCa--------GGUUCGAU---CUGCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 70666 0.68 0.667842
Target:  5'- uUGCGGGgcgcaaCAGGCaccuUGGA-GCCGCCGg -3'
miRNA:   3'- cACGCCCag----GUUCG----AUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 1079 0.68 0.674938
Target:  5'- cUGCGGGaCgGAGCgGGcuacagccggcgcaGCGCCGCCGc -3'
miRNA:   3'- cACGCCCaGgUUCGaUC--------------UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 1079 0.68 0.674938
Target:  5'- cUGCGGGaCgGAGCgGGcuacagccggcgcaGCGCCGCCGc -3'
miRNA:   3'- cACGCCCaGgUUCGaUC--------------UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 40552 0.68 0.677975
Target:  5'- -gGCGGGUC---GCUGGAgGCCGCg- -3'
miRNA:   3'- caCGCCCAGguuCGAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 86000 0.68 0.688069
Target:  5'- -cGCGGGUCCAGccGCaGGuGCGUCacGCCGa -3'
miRNA:   3'- caCGCCCAGGUU--CGaUC-UGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 107445 0.68 0.688069
Target:  5'- -aGCuGGacucguaCAAGCUGGACGCCAUCu -3'
miRNA:   3'- caCGcCCag-----GUUCGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 39523 0.68 0.688069
Target:  5'- -cGCGGG-CCAgcucgcggucguGGCUGccGGCGCC-CCGg -3'
miRNA:   3'- caCGCCCaGGU------------UCGAU--CUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 77145 0.68 0.688069
Target:  5'- --aCGGcGUCCAGGCUGGcgGCGaCCACgGg -3'
miRNA:   3'- cacGCC-CAGGUUCGAUC--UGC-GGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 127116 0.68 0.698119
Target:  5'- cUGCGGGUCCAcggGGUccgAGGCGgaCAUCGu -3'
miRNA:   3'- cACGCCCAGGU---UCGa--UCUGCg-GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 53854 0.68 0.698119
Target:  5'- -cGCGGGcacgaCC-AGC--GACGCCACCGc -3'
miRNA:   3'- caCGCCCa----GGuUCGauCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 10414 0.68 0.698119
Target:  5'- gGUGCGGcugcgCCcAGgaGGACGCCugCGc -3'
miRNA:   3'- -CACGCCca---GGuUCgaUCUGCGGugGC- -5'
25600 3' -58.2 NC_005337.1 + 46129 0.68 0.698119
Target:  5'- -aGCaGGUCCGcgAGCUccGACGCCAUgGg -3'
miRNA:   3'- caCGcCCAGGU--UCGAu-CUGCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 100253 0.68 0.702123
Target:  5'- cGUGgaGGGcgCCGAGCgggugcuccuccuGACGCCGCUGg -3'
miRNA:   3'- -CACg-CCCa-GGUUCGau-----------CUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 104641 0.67 0.708113
Target:  5'- cUGCGGcaCCucacGCUGGACaagGCCACCGu -3'
miRNA:   3'- cACGCCcaGGuu--CGAUCUG---CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 119873 0.67 0.708113
Target:  5'- -gGCGcGGUUCAGcgccggcggacuGCUGGACGUCAUCa -3'
miRNA:   3'- caCGC-CCAGGUU------------CGAUCUGCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.