miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 130748 0.67 0.708113
Target:  5'- -cGCuGGGUCCGAcGUgugcaccgUGGACGcCCGCCa -3'
miRNA:   3'- caCG-CCCAGGUU-CG--------AUCUGC-GGUGGc -5'
25600 3' -58.2 NC_005337.1 + 84593 0.67 0.715071
Target:  5'- gGUGUGGGUgaccacgagcgacgCCGugguGCUGGGCGUCACg- -3'
miRNA:   3'- -CACGCCCA--------------GGUu---CGAUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 121712 0.67 0.718043
Target:  5'- -cGCGGGg--AGGCggacaAGACGCCGCUGc -3'
miRNA:   3'- caCGCCCaggUUCGa----UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107660 0.67 0.718043
Target:  5'- -gGCGGGUUCAccguggAGCUGGAgGaCC-CCGc -3'
miRNA:   3'- caCGCCCAGGU------UCGAUCUgC-GGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 86277 0.67 0.724951
Target:  5'- -cGCGGaUCCAGGCcacgcagugcggccUGGACGCguCCGc -3'
miRNA:   3'- caCGCCcAGGUUCG--------------AUCUGCGguGGC- -5'
25600 3' -58.2 NC_005337.1 + 45534 0.67 0.7279
Target:  5'- -cGuCGGGagCCGGuGCUGGagucgGCGCCGCCGu -3'
miRNA:   3'- caC-GCCCa-GGUU-CGAUC-----UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 42867 0.67 0.736702
Target:  5'- cUGCGugacgaaGGUgCugGAGCgGGGCGCCGCCGa -3'
miRNA:   3'- cACGC-------CCAgG--UUCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 30244 0.67 0.737675
Target:  5'- uGUGCGGGU-CAGGCgcAGGCGCgGgCa -3'
miRNA:   3'- -CACGCCCAgGUUCGa-UCUGCGgUgGc -5'
25600 3' -58.2 NC_005337.1 + 48641 0.67 0.737675
Target:  5'- -gGCGGacgCCAgcgcgcAGCUGGACGCCgugaugaagGCCGu -3'
miRNA:   3'- caCGCCca-GGU------UCGAUCUGCGG---------UGGC- -5'
25600 3' -58.2 NC_005337.1 + 132618 0.67 0.737675
Target:  5'- -cGCGGcGgcggCCAAGCUcGuCGCCGCgGg -3'
miRNA:   3'- caCGCC-Ca---GGUUCGAuCuGCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 14444 0.67 0.737675
Target:  5'- -cGcCGGGUaCCGAGCgccGCGCUGCCa -3'
miRNA:   3'- caC-GCCCA-GGUUCGaucUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 117841 0.67 0.737675
Target:  5'- -cGCGGGUUCAGcacguGCgAGAUGaUCACCGg -3'
miRNA:   3'- caCGCCCAGGUU-----CGaUCUGC-GGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 127583 0.67 0.737675
Target:  5'- -gGCGGG-CgcAGCcgUGGACGUCGCCGa -3'
miRNA:   3'- caCGCCCaGguUCG--AUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 42550 0.67 0.747359
Target:  5'- cUGCGGGcgCUGgugcggcugcGGCUGGAgGCCGCgGg -3'
miRNA:   3'- cACGCCCa-GGU----------UCGAUCUgCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 93446 0.67 0.747359
Target:  5'- cGUGCGGcUCau-GCggaAGACGCCcGCCGg -3'
miRNA:   3'- -CACGCCcAGguuCGa--UCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 82977 0.67 0.747359
Target:  5'- -aGCGGGUgCGAGUUGcucACGCUcacGCCGg -3'
miRNA:   3'- caCGCCCAgGUUCGAUc--UGCGG---UGGC- -5'
25600 3' -58.2 NC_005337.1 + 66072 0.67 0.747359
Target:  5'- -gGCGGGcCCGcAGC--GGCGCCcCCGg -3'
miRNA:   3'- caCGCCCaGGU-UCGauCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 68214 0.67 0.754079
Target:  5'- cUGCGGGcccgccugacggcgUCCGGGUUccGGAgCGCgGCCGg -3'
miRNA:   3'- cACGCCC--------------AGGUUCGA--UCU-GCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 1415 0.67 0.756943
Target:  5'- uGUGCguguuugucuGGGUCUgcGAGCgcGGCGgCGCCGa -3'
miRNA:   3'- -CACG----------CCCAGG--UUCGauCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 81720 0.67 0.756943
Target:  5'- -cGCGGagccagucGUUCAGGCUcuGGcuguCGCCGCCGg -3'
miRNA:   3'- caCGCC--------CAGGUUCGA--UCu---GCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.