miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 1079 0.68 0.674938
Target:  5'- cUGCGGGaCgGAGCgGGcuacagccggcgcaGCGCCGCCGc -3'
miRNA:   3'- cACGCCCaGgUUCGaUC--------------UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 70666 0.68 0.667842
Target:  5'- uUGCGGGgcgcaaCAGGCaccuUGGA-GCCGCCGg -3'
miRNA:   3'- cACGCCCag----GUUCG----AUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 25064 0.68 0.657681
Target:  5'- cGUGCGGGcggcguucgUCAAGCUGcgcGACGCCGagcuCCGc -3'
miRNA:   3'- -CACGCCCa--------GGUUCGAU---CUGCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 58657 0.68 0.657681
Target:  5'- -cGCGGGacacgcgcgCCAAGCUcguGGACGCCuucaacGCCu -3'
miRNA:   3'- caCGCCCa--------GGUUCGA---UCUGCGG------UGGc -5'
25600 3' -58.2 NC_005337.1 + 4786 0.68 0.657681
Target:  5'- -cGCGGGUCCGuGC---ACGCCcCCGu -3'
miRNA:   3'- caCGCCCAGGUuCGaucUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 117012 0.68 0.647499
Target:  5'- cGUGCGccaGG-CCAcGCUccGGGCGCUGCCGa -3'
miRNA:   3'- -CACGC---CCaGGUuCGA--UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36936 0.68 0.647499
Target:  5'- -gGCGGGUacuucaCCAGGaaccGCGCCACCGc -3'
miRNA:   3'- caCGCCCA------GGUUCgaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 117288 0.69 0.627108
Target:  5'- -gGCgGGGUCCcgcgugcugGAGgUGGACGCCuCCGc -3'
miRNA:   3'- caCG-CCCAGG---------UUCgAUCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 45030 0.69 0.62099
Target:  5'- -aGCGuGGacugccgcacgaugcUCCGcaAGCUGGGCGCCgGCCGg -3'
miRNA:   3'- caCGC-CC---------------AGGU--UCGAUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 44657 0.69 0.62099
Target:  5'- -aGCGGGcgcuacgugggcgacUCCGAGaUAGGCGUgGCCGa -3'
miRNA:   3'- caCGCCC---------------AGGUUCgAUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 57279 0.69 0.616914
Target:  5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3'
miRNA:   3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 59298 0.69 0.616914
Target:  5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3'
miRNA:   3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 59901 0.69 0.613858
Target:  5'- -aGCGGGUCCcGGa-AGACccgcgugcugcccaGCCGCCGg -3'
miRNA:   3'- caCGCCCAGGuUCgaUCUG--------------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 51538 0.69 0.606732
Target:  5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3'
miRNA:   3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 101471 0.69 0.606732
Target:  5'- aGUGCGuGGaCCAGGCgcAGGCGCUGCUc -3'
miRNA:   3'- -CACGC-CCaGGUUCGa-UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 29591 0.69 0.596568
Target:  5'- -gGCGGuGUCCGAcGC-GGACGCCAUg- -3'
miRNA:   3'- caCGCC-CAGGUU-CGaUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 131211 0.69 0.596568
Target:  5'- -cGCGGaGUCCGcGCUAGcCGCCGgUGu -3'
miRNA:   3'- caCGCC-CAGGUuCGAUCuGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 93263 0.69 0.596568
Target:  5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3'
miRNA:   3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 129613 0.69 0.58643
Target:  5'- -cGUGGagcucGUCCGgcGGCUcGugGCCGCCGg -3'
miRNA:   3'- caCGCC-----CAGGU--UCGAuCugCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.