miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 84273 0.7 0.56626
Target:  5'- cUGCGaGGaCCAGGCUGGucuuCGCCAggucCCGg -3'
miRNA:   3'- cACGC-CCaGGUUCGAUCu---GCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 116010 0.7 0.56626
Target:  5'- cGUGCGGcucaCCGAGCaggUGGACGUgACCGu -3'
miRNA:   3'- -CACGCCca--GGUUCG---AUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36147 0.7 0.55624
Target:  5'- cGUGCGGGUCCAuGCUc-ACcCCGCUGc -3'
miRNA:   3'- -CACGCCCAGGUuCGAucUGcGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 6908 0.7 0.546273
Target:  5'- -cGCGGGUCCGcgccGGCgcgcAGcaucauCGCCACCa -3'
miRNA:   3'- caCGCCCAGGU----UCGa---UCu-----GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 74464 0.7 0.536363
Target:  5'- -gGCGGGUUCGAcgucucGCUGGACGCguaCAUCGu -3'
miRNA:   3'- caCGCCCAGGUU------CGAUCUGCG---GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107162 0.7 0.526516
Target:  5'- -cGCGuGG-CCAAGCggcugcuggAGAUGCCGCUGg -3'
miRNA:   3'- caCGC-CCaGGUUCGa--------UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 131381 0.71 0.507034
Target:  5'- -gGaCGuGGUCUGcAGCcGGACGCCGCCGg -3'
miRNA:   3'- caC-GC-CCAGGU-UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 76740 0.71 0.507034
Target:  5'- cGUGCaugcGGUCCAGGCccaggaAGACGCgCGCCa -3'
miRNA:   3'- -CACGc---CCAGGUUCGa-----UCUGCG-GUGGc -5'
25600 3' -58.2 NC_005337.1 + 127792 0.71 0.487865
Target:  5'- gGUGCGGGUgCu-GgUGGACGCCGgCGc -3'
miRNA:   3'- -CACGCCCAgGuuCgAUCUGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 71472 0.71 0.478409
Target:  5'- -cGCaGGUCUc-GCUGGACGCCacGCCGg -3'
miRNA:   3'- caCGcCCAGGuuCGAUCUGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 98988 0.71 0.478409
Target:  5'- -aGCGGGgCCGAGgUGGA-GCCGCCc -3'
miRNA:   3'- caCGCCCaGGUUCgAUCUgCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 66571 0.71 0.478409
Target:  5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3'
miRNA:   3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5'
25600 3' -58.2 NC_005337.1 + 60882 0.71 0.469045
Target:  5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3'
miRNA:   3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 47467 0.72 0.459775
Target:  5'- -gGCGGGUCCGugucGCUgccgucgcgGGACcuGCCGCCGc -3'
miRNA:   3'- caCGCCCAGGUu---CGA---------UCUG--CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 38072 0.73 0.397796
Target:  5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3'
miRNA:   3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 44417 0.73 0.381097
Target:  5'- -cGUGGGUCUgccgGAGCgccgGGAgcCGCCGCCGg -3'
miRNA:   3'- caCGCCCAGG----UUCGa---UCU--GCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.