miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 48641 0.67 0.737675
Target:  5'- -gGCGGacgCCAgcgcgcAGCUGGACGCCgugaugaagGCCGu -3'
miRNA:   3'- caCGCCca-GGU------UCGAUCUGCGG---------UGGC- -5'
25600 3' -58.2 NC_005337.1 + 49934 0.66 0.785
Target:  5'- -cGCGGGgacagcacgaCCAGGCUGGAgGUguuCACCu -3'
miRNA:   3'- caCGCCCa---------GGUUCGAUCUgCG---GUGGc -5'
25600 3' -58.2 NC_005337.1 + 51169 0.66 0.803038
Target:  5'- gGUG-GGGUCCAAcCUGGccauCGUCACCc -3'
miRNA:   3'- -CACgCCCAGGUUcGAUCu---GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 51538 0.69 0.606732
Target:  5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3'
miRNA:   3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 53854 0.68 0.698119
Target:  5'- -cGCGGGcacgaCC-AGC--GACGCCACCGc -3'
miRNA:   3'- caCGCCCa----GGuUCGauCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 57279 0.69 0.616914
Target:  5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3'
miRNA:   3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 58657 0.68 0.657681
Target:  5'- -cGCGGGacacgcgcgCCAAGCUcguGGACGCCuucaacGCCu -3'
miRNA:   3'- caCGCCCa--------GGUUCGA---UCUGCGG------UGGc -5'
25600 3' -58.2 NC_005337.1 + 59298 0.69 0.616914
Target:  5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3'
miRNA:   3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 59901 0.69 0.613858
Target:  5'- -aGCGGGUCCcGGa-AGACccgcgugcugcccaGCCGCCGg -3'
miRNA:   3'- caCGCCCAGGuUCgaUCUG--------------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 60882 0.71 0.469045
Target:  5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3'
miRNA:   3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 66072 0.67 0.747359
Target:  5'- -gGCGGGcCCGcAGC--GGCGCCcCCGg -3'
miRNA:   3'- caCGCCCaGGU-UCGauCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 66571 0.71 0.478409
Target:  5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3'
miRNA:   3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 68214 0.67 0.754079
Target:  5'- cUGCGGGcccgccugacggcgUCCGGGUUccGGAgCGCgGCCGg -3'
miRNA:   3'- cACGCCC--------------AGGUUCGA--UCU-GCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 69365 0.67 0.756943
Target:  5'- -cGCGGG-CCGGccGCUAG-CGCCAgguCCGc -3'
miRNA:   3'- caCGCCCaGGUU--CGAUCuGCGGU---GGC- -5'
25600 3' -58.2 NC_005337.1 + 70666 0.68 0.667842
Target:  5'- uUGCGGGgcgcaaCAGGCaccuUGGA-GCCGCCGg -3'
miRNA:   3'- cACGCCCag----GUUCG----AUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 71472 0.71 0.478409
Target:  5'- -cGCaGGUCUc-GCUGGACGCCacGCCGg -3'
miRNA:   3'- caCGcCCAGGuuCGAUCUGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 74464 0.7 0.536363
Target:  5'- -gGCGGGUUCGAcgucucGCUGGACGCguaCAUCGu -3'
miRNA:   3'- caCGCCCAGGUU------CGAUCUGCG---GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 76740 0.71 0.507034
Target:  5'- cGUGCaugcGGUCCAGGCccaggaAGACGCgCGCCa -3'
miRNA:   3'- -CACGc---CCAGGUUCGa-----UCUGCG-GUGGc -5'
25600 3' -58.2 NC_005337.1 + 77145 0.68 0.688069
Target:  5'- --aCGGcGUCCAGGCUGGcgGCGaCCACgGg -3'
miRNA:   3'- cacGCC-CAGGUUCGAUC--UGC-GGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.