miRNA display CGI


Results 61 - 80 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 80306 1.08 0.001823
Target:  5'- cGUGCGGGUCCAAGCUAGACGCCACCGc -3'
miRNA:   3'- -CACGCCCAGGUUCGAUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 81720 0.67 0.756943
Target:  5'- -cGCGGagccagucGUUCAGGCUcuGGcuguCGCCGCCGg -3'
miRNA:   3'- caCGCC--------CAGGUUCGA--UCu---GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 82977 0.67 0.747359
Target:  5'- -aGCGGGUgCGAGUUGcucACGCUcacGCCGg -3'
miRNA:   3'- caCGCCCAgGUUCGAUc--UGCGG---UGGC- -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 84273 0.7 0.56626
Target:  5'- cUGCGaGGaCCAGGCUGGucuuCGCCAggucCCGg -3'
miRNA:   3'- cACGC-CCaGGUUCGAUCu---GCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 84593 0.67 0.715071
Target:  5'- gGUGUGGGUgaccacgagcgacgCCGugguGCUGGGCGUCACg- -3'
miRNA:   3'- -CACGCCCA--------------GGUu---CGAUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 85393 0.66 0.774842
Target:  5'- gGUGCGuGGUcuggccgCCGGGCggGGACGCgCACuCGu -3'
miRNA:   3'- -CACGC-CCA-------GGUUCGa-UCUGCG-GUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 86000 0.68 0.688069
Target:  5'- -cGCGGGUCCAGccGCaGGuGCGUCacGCCGa -3'
miRNA:   3'- caCGCCCAGGUU--CGaUC-UGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 86277 0.67 0.724951
Target:  5'- -cGCGGaUCCAGGCcacgcagugcggccUGGACGCguCCGc -3'
miRNA:   3'- caCGCCcAGGUUCG--------------AUCUGCGguGGC- -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 89187 0.66 0.775772
Target:  5'- -aGgGGGUgCCGGGCgcu-CGCCGCCc -3'
miRNA:   3'- caCgCCCA-GGUUCGaucuGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 91761 0.67 0.756943
Target:  5'- cGUGCGccUCgAAGCUGGACGuCCGCa- -3'
miRNA:   3'- -CACGCccAGgUUCGAUCUGC-GGUGgc -5'
25600 3' -58.2 NC_005337.1 + 93263 0.69 0.596568
Target:  5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3'
miRNA:   3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 93446 0.67 0.747359
Target:  5'- cGUGCGGcUCau-GCggaAGACGCCcGCCGg -3'
miRNA:   3'- -CACGCCcAGguuCGa--UCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 95758 0.66 0.785
Target:  5'- -gGCGGGcccugcaCCAGGCgcgcccGGGCGgCCACCu -3'
miRNA:   3'- caCGCCCa------GGUUCGa-----UCUGC-GGUGGc -5'
25600 3' -58.2 NC_005337.1 + 97020 0.75 0.291093
Target:  5'- cGUGCGGGUUC-GGCaAGACGCUgACCGc -3'
miRNA:   3'- -CACGCCCAGGuUCGaUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 98988 0.71 0.478409
Target:  5'- -aGCGGGgCCGAGgUGGA-GCCGCCc -3'
miRNA:   3'- caCGCCCaGGUUCgAUCUgCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 100253 0.68 0.702123
Target:  5'- cGUGgaGGGcgCCGAGCgggugcuccuccuGACGCCGCUGg -3'
miRNA:   3'- -CACg-CCCa-GGUUCGau-----------CUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 101471 0.69 0.606732
Target:  5'- aGUGCGuGGaCCAGGCgcAGGCGCUGCUc -3'
miRNA:   3'- -CACGC-CCaGGUUCGa-UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 104641 0.67 0.708113
Target:  5'- cUGCGGcaCCucacGCUGGACaagGCCACCGu -3'
miRNA:   3'- cACGCCcaGGuu--CGAUCUG---CGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.