miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107162 0.7 0.526516
Target:  5'- -cGCGuGG-CCAAGCggcugcuggAGAUGCCGCUGg -3'
miRNA:   3'- caCGC-CCaGGUUCGa--------UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107445 0.68 0.688069
Target:  5'- -aGCuGGacucguaCAAGCUGGACGCCAUCu -3'
miRNA:   3'- caCGcCCag-----GUUCGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 107660 0.67 0.718043
Target:  5'- -gGCGGGUUCAccguggAGCUGGAgGaCC-CCGc -3'
miRNA:   3'- caCGCCCAGGU------UCGAUCUgC-GGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 109187 0.66 0.775772
Target:  5'- -cGCGGG-CgGAGCUcGGCGUCGCg- -3'
miRNA:   3'- caCGCCCaGgUUCGAuCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 110500 0.67 0.756943
Target:  5'- -cGCGGGUUgAAuacGCUAGACGgaCugCGg -3'
miRNA:   3'- caCGCCCAGgUU---CGAUCUGCg-GugGC- -5'
25600 3' -58.2 NC_005337.1 + 116010 0.7 0.56626
Target:  5'- cGUGCGGcucaCCGAGCaggUGGACGUgACCGu -3'
miRNA:   3'- -CACGCCca--GGUUCG---AUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 116441 0.75 0.304861
Target:  5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3'
miRNA:   3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 117012 0.68 0.647499
Target:  5'- cGUGCGccaGG-CCAcGCUccGGGCGCUGCCGa -3'
miRNA:   3'- -CACGC---CCaGGUuCGA--UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 117288 0.69 0.627108
Target:  5'- -gGCgGGGUCCcgcgugcugGAGgUGGACGCCuCCGc -3'
miRNA:   3'- caCG-CCCAGG---------UUCgAUCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 117841 0.67 0.737675
Target:  5'- -cGCGGGUUCAGcacguGCgAGAUGaUCACCGg -3'
miRNA:   3'- caCGCCCAGGUU-----CGaUCUGC-GGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 118240 0.66 0.766417
Target:  5'- -cGCGGaGcCCGAGg-AGACGCCGCg- -3'
miRNA:   3'- caCGCC-CaGGUUCgaUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 119873 0.67 0.708113
Target:  5'- -gGCGcGGUUCAGcgccggcggacuGCUGGACGUCAUCa -3'
miRNA:   3'- caCGC-CCAGGUU------------CGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 121712 0.67 0.718043
Target:  5'- -cGCGGGg--AGGCggacaAGACGCCGCUGc -3'
miRNA:   3'- caCGCCCaggUUCGa----UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 124925 0.66 0.794092
Target:  5'- -cGCGcGUCCAGGCgacGCGUCAUCGc -3'
miRNA:   3'- caCGCcCAGGUUCGaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 127116 0.68 0.698119
Target:  5'- cUGCGGGUCCAcggGGUccgAGGCGgaCAUCGu -3'
miRNA:   3'- cACGCCCAGGU---UCGa--UCUGCg-GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 127583 0.67 0.737675
Target:  5'- -gGCGGG-CgcAGCcgUGGACGUCGCCGa -3'
miRNA:   3'- caCGCCCaGguUCG--AUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 127792 0.71 0.487865
Target:  5'- gGUGCGGGUgCu-GgUGGACGCCGgCGc -3'
miRNA:   3'- -CACGCCCAgGuuCgAUCUGCGGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.