miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 110500 0.67 0.756943
Target:  5'- -cGCGGGUUgAAuacGCUAGACGgaCugCGg -3'
miRNA:   3'- caCGCCCAGgUU---CGAUCUGCg-GugGC- -5'
25600 3' -58.2 NC_005337.1 + 109187 0.66 0.775772
Target:  5'- -cGCGGG-CgGAGCUcGGCGUCGCg- -3'
miRNA:   3'- caCGCCCaGgUUCGAuCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107660 0.67 0.718043
Target:  5'- -gGCGGGUUCAccguggAGCUGGAgGaCC-CCGc -3'
miRNA:   3'- caCGCCCAGGU------UCGAUCUgC-GGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 107445 0.68 0.688069
Target:  5'- -aGCuGGacucguaCAAGCUGGACGCCAUCu -3'
miRNA:   3'- caCGcCCag-----GUUCGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 107162 0.7 0.526516
Target:  5'- -cGCGuGG-CCAAGCggcugcuggAGAUGCCGCUGg -3'
miRNA:   3'- caCGC-CCaGGUUCGa--------UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 104641 0.67 0.708113
Target:  5'- cUGCGGcaCCucacGCUGGACaagGCCACCGu -3'
miRNA:   3'- cACGCCcaGGuu--CGAUCUG---CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 101471 0.69 0.606732
Target:  5'- aGUGCGuGGaCCAGGCgcAGGCGCUGCUc -3'
miRNA:   3'- -CACGC-CCaGGUUCGa-UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 100253 0.68 0.702123
Target:  5'- cGUGgaGGGcgCCGAGCgggugcuccuccuGACGCCGCUGg -3'
miRNA:   3'- -CACg-CCCa-GGUUCGau-----------CUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 98988 0.71 0.478409
Target:  5'- -aGCGGGgCCGAGgUGGA-GCCGCCc -3'
miRNA:   3'- caCGCCCaGGUUCgAUCUgCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 97020 0.75 0.291093
Target:  5'- cGUGCGGGUUC-GGCaAGACGCUgACCGc -3'
miRNA:   3'- -CACGCCCAGGuUCGaUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 95758 0.66 0.785
Target:  5'- -gGCGGGcccugcaCCAGGCgcgcccGGGCGgCCACCu -3'
miRNA:   3'- caCGCCCa------GGUUCGa-----UCUGC-GGUGGc -5'
25600 3' -58.2 NC_005337.1 + 93446 0.67 0.747359
Target:  5'- cGUGCGGcUCau-GCggaAGACGCCcGCCGg -3'
miRNA:   3'- -CACGCCcAGguuCGa--UCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 93263 0.69 0.596568
Target:  5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3'
miRNA:   3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 91761 0.67 0.756943
Target:  5'- cGUGCGccUCgAAGCUGGACGuCCGCa- -3'
miRNA:   3'- -CACGCccAGgUUCGAUCUGC-GGUGgc -5'
25600 3' -58.2 NC_005337.1 + 89187 0.66 0.775772
Target:  5'- -aGgGGGUgCCGGGCgcu-CGCCGCCc -3'
miRNA:   3'- caCgCCCA-GGUUCGaucuGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 86277 0.67 0.724951
Target:  5'- -cGCGGaUCCAGGCcacgcagugcggccUGGACGCguCCGc -3'
miRNA:   3'- caCGCCcAGGUUCG--------------AUCUGCGguGGC- -5'
25600 3' -58.2 NC_005337.1 + 86000 0.68 0.688069
Target:  5'- -cGCGGGUCCAGccGCaGGuGCGUCacGCCGa -3'
miRNA:   3'- caCGCCCAGGUU--CGaUC-UGCGG--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.