miRNA display CGI


Results 41 - 60 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 85393 0.66 0.774842
Target:  5'- gGUGCGuGGUcuggccgCCGGGCggGGACGCgCACuCGu -3'
miRNA:   3'- -CACGC-CCA-------GGUUCGa-UCUGCG-GUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 84593 0.67 0.715071
Target:  5'- gGUGUGGGUgaccacgagcgacgCCGugguGCUGGGCGUCACg- -3'
miRNA:   3'- -CACGCCCA--------------GGUu---CGAUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 84273 0.7 0.56626
Target:  5'- cUGCGaGGaCCAGGCUGGucuuCGCCAggucCCGg -3'
miRNA:   3'- cACGC-CCaGGUUCGAUCu---GCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 82977 0.67 0.747359
Target:  5'- -aGCGGGUgCGAGUUGcucACGCUcacGCCGg -3'
miRNA:   3'- caCGCCCAgGUUCGAUc--UGCGG---UGGC- -5'
25600 3' -58.2 NC_005337.1 + 81720 0.67 0.756943
Target:  5'- -cGCGGagccagucGUUCAGGCUcuGGcuguCGCCGCCGg -3'
miRNA:   3'- caCGCC--------CAGGUUCGA--UCu---GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 80306 1.08 0.001823
Target:  5'- cGUGCGGGUCCAAGCUAGACGCCACCGc -3'
miRNA:   3'- -CACGCCCAGGUUCGAUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 77145 0.68 0.688069
Target:  5'- --aCGGcGUCCAGGCUGGcgGCGaCCACgGg -3'
miRNA:   3'- cacGCC-CAGGUUCGAUC--UGC-GGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 76740 0.71 0.507034
Target:  5'- cGUGCaugcGGUCCAGGCccaggaAGACGCgCGCCa -3'
miRNA:   3'- -CACGc---CCAGGUUCGa-----UCUGCG-GUGGc -5'
25600 3' -58.2 NC_005337.1 + 74464 0.7 0.536363
Target:  5'- -gGCGGGUUCGAcgucucGCUGGACGCguaCAUCGu -3'
miRNA:   3'- caCGCCCAGGUU------CGAUCUGCG---GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 71472 0.71 0.478409
Target:  5'- -cGCaGGUCUc-GCUGGACGCCacGCCGg -3'
miRNA:   3'- caCGcCCAGGuuCGAUCUGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 70666 0.68 0.667842
Target:  5'- uUGCGGGgcgcaaCAGGCaccuUGGA-GCCGCCGg -3'
miRNA:   3'- cACGCCCag----GUUCG----AUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 69365 0.67 0.756943
Target:  5'- -cGCGGG-CCGGccGCUAG-CGCCAgguCCGc -3'
miRNA:   3'- caCGCCCaGGUU--CGAUCuGCGGU---GGC- -5'
25600 3' -58.2 NC_005337.1 + 68214 0.67 0.754079
Target:  5'- cUGCGGGcccgccugacggcgUCCGGGUUccGGAgCGCgGCCGg -3'
miRNA:   3'- cACGCCC--------------AGGUUCGA--UCU-GCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 66571 0.71 0.478409
Target:  5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3'
miRNA:   3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5'
25600 3' -58.2 NC_005337.1 + 66072 0.67 0.747359
Target:  5'- -gGCGGGcCCGcAGC--GGCGCCcCCGg -3'
miRNA:   3'- caCGCCCaGGU-UCGauCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 60882 0.71 0.469045
Target:  5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3'
miRNA:   3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 59901 0.69 0.613858
Target:  5'- -aGCGGGUCCcGGa-AGACccgcgugcugcccaGCCGCCGg -3'
miRNA:   3'- caCGCCCAGGuUCgaUCUG--------------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 59298 0.69 0.616914
Target:  5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3'
miRNA:   3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.