miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 58657 0.68 0.657681
Target:  5'- -cGCGGGacacgcgcgCCAAGCUcguGGACGCCuucaacGCCu -3'
miRNA:   3'- caCGCCCa--------GGUUCGA---UCUGCGG------UGGc -5'
25600 3' -58.2 NC_005337.1 + 57279 0.69 0.616914
Target:  5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3'
miRNA:   3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 53854 0.68 0.698119
Target:  5'- -cGCGGGcacgaCC-AGC--GACGCCACCGc -3'
miRNA:   3'- caCGCCCa----GGuUCGauCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 51538 0.69 0.606732
Target:  5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3'
miRNA:   3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 51169 0.66 0.803038
Target:  5'- gGUG-GGGUCCAAcCUGGccauCGUCACCc -3'
miRNA:   3'- -CACgCCCAGGUUcGAUCu---GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 49934 0.66 0.785
Target:  5'- -cGCGGGgacagcacgaCCAGGCUGGAgGUguuCACCu -3'
miRNA:   3'- caCGCCCa---------GGUUCGAUCUgCG---GUGGc -5'
25600 3' -58.2 NC_005337.1 + 48641 0.67 0.737675
Target:  5'- -gGCGGacgCCAgcgcgcAGCUGGACGCCgugaugaagGCCGu -3'
miRNA:   3'- caCGCCca-GGU------UCGAUCUGCGG---------UGGC- -5'
25600 3' -58.2 NC_005337.1 + 47467 0.72 0.459775
Target:  5'- -gGCGGGUCCGugucGCUgccgucgcgGGACcuGCCGCCGc -3'
miRNA:   3'- caCGCCCAGGUu---CGA---------UCUG--CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 46129 0.68 0.698119
Target:  5'- -aGCaGGUCCGcgAGCUccGACGCCAUgGg -3'
miRNA:   3'- caCGcCCAGGU--UCGAu-CUGCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 45961 0.66 0.775772
Target:  5'- -cGUGGcGUCCAcGCU-GACGUCcCCGa -3'
miRNA:   3'- caCGCC-CAGGUuCGAuCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 45534 0.67 0.7279
Target:  5'- -cGuCGGGagCCGGuGCUGGagucgGCGCCGCCGu -3'
miRNA:   3'- caC-GCCCa-GGUU-CGAUC-----UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 45030 0.69 0.62099
Target:  5'- -aGCGuGGacugccgcacgaugcUCCGcaAGCUGGGCGCCgGCCGg -3'
miRNA:   3'- caCGC-CC---------------AGGU--UCGAUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 44657 0.69 0.62099
Target:  5'- -aGCGGGcgcuacgugggcgacUCCGAGaUAGGCGUgGCCGa -3'
miRNA:   3'- caCGCCC---------------AGGUUCgAUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 44417 0.73 0.381097
Target:  5'- -cGUGGGUCUgccgGAGCgccgGGAgcCGCCGCCGg -3'
miRNA:   3'- caCGCCCAGG----UUCGa---UCU--GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 42867 0.67 0.736702
Target:  5'- cUGCGugacgaaGGUgCugGAGCgGGGCGCCGCCGa -3'
miRNA:   3'- cACGC-------CCAgG--UUCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 42550 0.67 0.747359
Target:  5'- cUGCGGGcgCUGgugcggcugcGGCUGGAgGCCGCgGg -3'
miRNA:   3'- cACGCCCa-GGU----------UCGAUCUgCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 40552 0.68 0.677975
Target:  5'- -gGCGGGUC---GCUGGAgGCCGCg- -3'
miRNA:   3'- caCGCCCAGguuCGAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 39523 0.68 0.688069
Target:  5'- -cGCGGG-CCAgcucgcggucguGGCUGccGGCGCC-CCGg -3'
miRNA:   3'- caCGCCCaGGU------------UCGAU--CUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 38651 0.74 0.349131
Target:  5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3'
miRNA:   3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 38072 0.73 0.397796
Target:  5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3'
miRNA:   3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.