miRNA display CGI


Results 81 - 100 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 36936 0.68 0.647499
Target:  5'- -gGCGGGUacuucaCCAGGaaccGCGCCACCGc -3'
miRNA:   3'- caCGCCCA------GGUUCgaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36756 0.74 0.341444
Target:  5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3'
miRNA:   3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 36535 0.74 0.364872
Target:  5'- -cGCGGGcgUCCccggcGGCUGGGCGgCGCCGg -3'
miRNA:   3'- caCGCCC--AGGu----UCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36147 0.7 0.55624
Target:  5'- cGUGCGGGUCCAuGCUc-ACcCCGCUGc -3'
miRNA:   3'- -CACGCCCAGGUuCGAucUGcGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 35946 0.67 0.756943
Target:  5'- -cGCaGGcagcaCCGGGUagGGACGCCGCCGc -3'
miRNA:   3'- caCGcCCa----GGUUCGa-UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 35743 0.67 0.756943
Target:  5'- -gGUGGuGUCguAcgcGCUGGGCGCgACCGg -3'
miRNA:   3'- caCGCC-CAGguU---CGAUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 33676 0.66 0.803038
Target:  5'- -aGCGaGGcgCCgAGGCcggcGGGCGCCACCu -3'
miRNA:   3'- caCGC-CCa-GG-UUCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 31423 0.66 0.775772
Target:  5'- aGUGCGGGUgCGuGC-GGAaGCUGCCGu -3'
miRNA:   3'- -CACGCCCAgGUuCGaUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 30244 0.67 0.737675
Target:  5'- uGUGCGGGU-CAGGCgcAGGCGCgGgCa -3'
miRNA:   3'- -CACGCCCAgGUUCGa-UCUGCGgUgGc -5'
25600 3' -58.2 NC_005337.1 + 29591 0.69 0.596568
Target:  5'- -gGCGGuGUCCGAcGC-GGACGCCAUg- -3'
miRNA:   3'- caCGCC-CAGGUU-CGaUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 25064 0.68 0.657681
Target:  5'- cGUGCGGGcggcguucgUCAAGCUGcgcGACGCCGagcuCCGc -3'
miRNA:   3'- -CACGCCCa--------GGUUCGAU---CUGCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 22099 0.66 0.785
Target:  5'- cGUGUGGGcguuccucgUCAAGCgGGACGUCGgCGg -3'
miRNA:   3'- -CACGCCCa--------GGUUCGaUCUGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 14706 0.66 0.794092
Target:  5'- gGUGCGGGUaCCu-GCUcuccacGACGCCcaucGCCa -3'
miRNA:   3'- -CACGCCCA-GGuuCGAu-----CUGCGG----UGGc -5'
25600 3' -58.2 NC_005337.1 + 14444 0.67 0.737675
Target:  5'- -cGcCGGGUaCCGAGCgccGCGCUGCCa -3'
miRNA:   3'- caC-GCCCA-GGUUCGaucUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 11920 0.66 0.766417
Target:  5'- -cGUGGcGUCCGAuGCggcacccGGGCGCgCGCCGu -3'
miRNA:   3'- caCGCC-CAGGUU-CGa------UCUGCG-GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 10414 0.68 0.698119
Target:  5'- gGUGCGGcugcgCCcAGgaGGACGCCugCGc -3'
miRNA:   3'- -CACGCCca---GGuUCgaUCUGCGGugGC- -5'
25600 3' -58.2 NC_005337.1 + 9578 0.66 0.785
Target:  5'- uGUGCGaGGucUCCGGGUUcgcguGAuUGCCGCCGg -3'
miRNA:   3'- -CACGC-CC--AGGUUCGAu----CU-GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 6908 0.7 0.546273
Target:  5'- -cGCGGGUCCGcgccGGCgcgcAGcaucauCGCCACCa -3'
miRNA:   3'- caCGCCCAGGU----UCGa---UCu-----GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 4786 0.68 0.657681
Target:  5'- -cGCGGGUCCGuGC---ACGCCcCCGu -3'
miRNA:   3'- caCGCCCAGGUuCGaucUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 1654 0.66 0.766417
Target:  5'- -cGCGGcgaCGAGCuUGGcCGCCGCCGc -3'
miRNA:   3'- caCGCCcagGUUCG-AUCuGCGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.